RNA id: XM_039811210.1


Basic Information

Item Value
RNA id XM_039811210.1
length 534
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC120565402
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4160909 ~ 4161442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATAAAATGTGTTCAAACTTCTCAAAGCCAATCAGAAGGAAGAGTCTTAACTGCCTGCCGTTAGGCCCCGCCCAGCGAGACACAGGCCCCCTGCTCTCTCTTACGTCCGCAGATAAGACGTAAATACAGCCGTTTGAACACCGTCAAGTCATTCGTTTCATCGATCTCAACTGAAAAATGTCTGGAAGAGGAAAAGGCGGGAAGGGACTCGGGAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGCGGCGGAGTGAAGCGTATCTCCGGTCTTATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGGCCGCACCCTGTACGGCTTCGGAGGCTAAATTACCCGGATCAACGACAACACAacggctcttttaagagccacc

Function

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125636 lncRNA upstream 57041 4102854 ~ 4103868 (+) True G93128
TU125281 lncRNA upstream 134638 3980907 ~ 4026271 (+) True G92915
TU125260 lncRNA upstream 236610 3865706 ~ 3924299 (+) True G92894
TU125257 lncRNA upstream 271768 3876213 ~ 3889141 (+) True G92893
TU125255 lncRNA upstream 283537 3827312 ~ 3877372 (+) True G92892
TU125670 lncRNA downstream 6879 4168321 ~ 4168724 (+) False G93151
TU125671 lncRNA downstream 6879 4168321 ~ 4197972 (+) True G93151
TU125668 lncRNA downstream 13160 4174602 ~ 4217826 (+) False G93150
TU125667 lncRNA downstream 17673 4179115 ~ 4187462 (+) True G93149
XR_005640231.1 lncRNA downstream 74366 4235808 ~ 4240337 (+) True LOC120565405
XM_039811213.1 mRNA upstream 9906 4146493 ~ 4151003 (+) True LOC120565404
XM_039811205.1 mRNA upstream 18803 4141578 ~ 4142106 (+) True LOC120565396
XM_039811203.1 mRNA upstream 28336 4131863 ~ 4132573 (+) True LOC120565394
XM_039811967.1 mRNA upstream 306099 3826863 ~ 3854810 (+) True LOC120565880
XM_039811503.1 mRNA upstream 337127 3714919 ~ 3823782 (+) True frem1b
XM_039811193.1 mRNA downstream 123313 4284755 ~ 4294092 (+) False LOC120565391
XM_039811196.1 mRNA downstream 123322 4284764 ~ 4305130 (+) False LOC120565391
XM_039811198.1 mRNA downstream 140181 4301623 ~ 4313515 (+) False LOC120565391
XM_039811194.1 mRNA downstream 140181 4301623 ~ 4313515 (+) False LOC120565391
XM_039811195.1 mRNA downstream 140181 4301623 ~ 4313515 (+) False LOC120565391
TU125177 other upstream 554084 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 567525 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 582929 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 670549 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 794180 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 35382 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 123460 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 128899 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 550119 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1873927 6035369 ~ 6040119 (+) False G93613

Expression Profile