RNA id: XM_039811225.1


Basic Information

Item Value
RNA id XM_039811225.1
length 2131
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120565422
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2821642 ~ 2840859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagaaccaTCAGAGCAGAGAAAAGCTGTGGACATTCACAAGATGGTGAAGATGCAGTGGAGTCTGTTTGTGTTCATTGTGATGGGTCAGTGTTCCTCCATTGGGGGTCAGCTGTATGACTACCACTTCATTGGAGAGAATAAGACCTGGAAAGAAGCCCAGGAGTATTGCAGAAAGAACCACACTGACCTGGCCACAGTGTCTAACCAGACAGATATGAAGAGACTCCTTAACTCCACGACTGCACGGTATGCAGACGGAGCCTGGATTGGGCTGcaagaaaacacaacaaacatcgTGTGGCGCTGGTCTCAGCCAAGGGTGGAGTTCAACAAGAGTGAGAGTAACTGGTATCAAGGACAGCCAAATAATGTAGACGATCAGGAGATCTGTGTGAGGATGAATGGTGGGACATGGGATGACGACTCTTGTTCTAACAGCTATGAATTTATCTGCTATGACGaaaacagaaaatctgggaaaacattttttatcagTCACAACAAGATGAACTGGCCAGAGGCTCAGAGGTTCTGCAAAGAAAATTACACTGACCTGATCAGTGGAGTCAAACAGCTAGAAGACTTCAAGACACAGCGCCAGAATGATGCAGAACCTTTCTGGATCGGCCTGTTCAGACACTGCTGGAGTTGGTCAGATGGGAGCAGTTTCTCTTTCAGATCCTGGGATAAAGGTCAACCTGAGAAGACAGGTGCTGTGACTACGTCTAACAAGAAATGTGCTACGACTACGTTAGATGGAAAATGGAGCTCAGATGACTGTGATAATAAAAAACCCTTCTTCTGCAACTGTCAGAGTTCCTCCATTGGGGGTCAGCTGTGTGACTACCACTTCATTGGAGAGAAGAAGACCTGGAAAGAAGCCCAGGAGTATTGCAGAAAGAACCACACTGACCTGGCCACAGTGGCTAACCAGACAGACATGAAGAGACTCCACTACAATCTACTGTATCCAGCCGGAGCCTGGATTGGGCTGCACGACAAAACACCAAACTTCGTGTGGCGCTGGTCTCAGTCAGGGGTGGAGTTcaaagagagtgagagtgaatgGTCTCCAGGACAGCTGAATAATGTAGGCGATCAGGAGAACTGTGTGAGGATGAAGAATGACATATGGGATGATGACTCCTGTACTACAACCTATAAATTTATCTGCTATGACGAACACAAGAAAACCGGCAAAACATTTTATATCAGTGATGATAAGAAGACCTGGCTAGACGCTCAGAGGTTCTGCAGAGAACAATACACTGACCTGATCAGTGGAGTCCAACAGATAGAAGACTTCGAGACACAGCGCCAGAATGAAGCAGAACCTTTCTGGATCGGCCTGTTCAGAGACTCTTTCTGGAGTTGGTCAGATGGGAGCAGTTTCTCCTTCAGATCCTGGGATCAAGGTCAACCTGAGAAGACATGTGCTATGACTACGTCAGATGGAAAATGGAGCTCTGATGACTGTAATAAAACCAAACCCTTCTTCTGCTACAACGATTCAGTGATCCTGATCAACCAGAGCATGATCTGGGAGGATGCGTTATACTACTGCAGACATCACCATGGCGACCTTGTCTCCATCACCAACCAGGACGATCAGCGCTGGGTCCAGGAGAGAGCCAAGATGGCCTCCACTCCCCACGTGTGGATGGGACTGCGCTACACCTGCACTCTGGACTTCTGGTTCTGGGTCAGTGACGAGACGGTCCACTACAAGAACTGGGCCCTCCCCCAGTCTGGGAACGACTGCAACATGTCTGGAGCCATGGACCGAAATGGAACTTGGGTCAAATTGATCGACGATGACCACCAGCTTAACTTCATCTGTTCCAAGTAAAAACCAgcagaatgtaactaagtacatttactcaagtactgtacttcagtaatAATGTTGGTGAGATGAGGCACTTTACTTATAGCTCAAAGTTAATATTTCAACTAAgttacattttaacagtgtgggattaatacttTGACTTAAGTTAAGgatgtgttttattcatttactcACTTTGTTTGCAGTGGTGTGACGTTGACATACTGTGTGTCCTCTGGGATTATTGaatggcattctgggaaatgtaggaacttATATCTCAAAGTAaatatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124929 lncRNA upstream 21609 2775493 ~ 2800033 (+) True G92722
TU124919 lncRNA upstream 60285 2761132 ~ 2761357 (+) True G92713
TU124900 lncRNA upstream 94570 2726733 ~ 2727072 (+) True G92695
TU124804 lncRNA upstream 232573 2588616 ~ 2589069 (+) True G92611
TU124755 lncRNA upstream 241756 2579024 ~ 2579886 (+) True G92578
TU124947 lncRNA downstream 109 2840968 ~ 2841202 (+) True G92740
TU124954 lncRNA downstream 20133 2860992 ~ 2865958 (+) True G92747
TU125005 lncRNA downstream 166837 3007696 ~ 3008065 (+) True G92779
TU124997 lncRNA downstream 169815 3010674 ~ 3037899 (+) False G92773
TU124996 lncRNA downstream 171623 3012482 ~ 3037225 (+) False G92773
XM_039811224.1 mRNA upstream 227659 2586515 ~ 2593983 (+) True LOC120565421
XM_039811240.1 mRNA upstream 360045 2450531 ~ 2461597 (+) True LOC120565432
XM_039811235.1 mRNA upstream 394515 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA upstream 394515 2424033 ~ 2427127 (+) True LOC120565428
XM_039811234.1 mRNA upstream 401037 2412231 ~ 2420605 (+) True LOC120565427
XM_039811246.1 mRNA downstream 4885 2845744 ~ 2859118 (+) True LOC120565437
XM_039811247.1 mRNA downstream 158761 2999620 ~ 3002539 (+) True LOC120565438
XM_039811502.1 mRNA downstream 376867 3217726 ~ 3574149 (+) True LOC120565597
XM_039811258.1 mRNA downstream 496973 3337832 ~ 3348216 (+) True LOC120565455
XM_039812269.1 mRNA downstream 789325 3630184 ~ 3633365 (+) True LOC120566051
TU124750 other upstream 239271 2533744 ~ 2582371 (+) True G92575
TU124352 other upstream 441382 2371988 ~ 2380260 (+) False reep6
TU124353 other upstream 441382 2371988 ~ 2380260 (+) True reep6
TU124333 other upstream 453326 2366120 ~ 2368316 (+) False G92333
TU124251 other upstream 745538 2072182 ~ 2076104 (+) True G92293
TU124983 other downstream 141367 2982226 ~ 2983014 (+) True G92770
TU124998 other downstream 169815 3010674 ~ 3014853 (+) False G92773
TU124988 other downstream 170907 3011766 ~ 3094410 (+) True G92773
TU124992 other downstream 170907 3011766 ~ 3094410 (+) False G92773
TU125014 other downstream 285030 3125889 ~ 3132204 (+) True G92782

Expression Profile