RNA id: XM_039811242.1


Basic Information

Item Value
RNA id XM_039811242.1
length 1355
RNA type mRNA
GC content 0.58
exon number 7
gene id dph5
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2050962 ~ 2071903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAGAGAGACTCCACGTGAAGGCACATAAACATAACGTGAACCGGCTGATCGGCCTCGTGAGTAAAGTTTTTGGTGGTGTTTAGTTCCGCAGCAGTGTGACACCGAGTCTCCGCGGAGAGAGAAGCCGGCAGCATGCTGTATCTGATCGGCCTGGGGCTCGGAGACGCGGCCGACATCACGGTGAAGGGTCTGCAGGCCGTGAAGCGCTGCAGCCGGGTCTACCTGGAGGCCTACACCTCGGTCCTCACGGTGGGGAAGGAGGCTCTGGAGGAGTATTATGGGATGGAGCTGATCCTGGCTGACAGAGACCTGGTGGAGCAGGGGGCAGACCAGATCCTGAAGGACGCAGACACCACCGATGTTGGGTTCCTCGTGGTCGGAGACCCGTTCGGAGCCACCACGCACAGCGACCTGGTGCTGAgagcagtgcatgctgggataccGTACAAGGTCATCCACAACGCCTCCATCATGAACGCCGTGGGCTGCTGCGGCCTGCAGctGTATAACTTTGGGGAGACGGTGTCCTTGGTGTTCTGGACCGAGACCTGGAGACCAGAGAGCTTCTACGACAAAATCTGTAAAAACAGAACAGCTGGACTACACACACTGTGTCTGCtggatattaaagtgaaagagcagagcATCGAGAACATGATGAGAGGGAAGAAGATCTTCGAGCCGCCTCGCTTCATGACGGTCAGTCAGGCTGCAGATCAGCTGATCCAGATCAtccagaggaggaggggggagggggaggagctGGGCGTGACGgaggacactgtgtgtgtgggcgtggcCCGGCTCGGCGCCGACGACCAGACAATCCGCGCGGCGACGTTGCGTCAGCTGGCGTCATGTGACCTCGGCGGCCCGCTCCATTCGCTGGTCGTCACCGGTAAACTCCACCCGCTGGAGGTGGACATGCTGCGAGTGAACGCAGAACCAAACGCACTGCAGCACCTTCACATGATTGACAGCTCCACCTACTGCTCCTAACACACCTCCACCTACTGTTCCTCCACCTACTGCTCCTAACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACTCACACCTCCACCTACTGCTCCTAACACGTCCACCTACTGCTCCTCCACCTACTGCTTCTAACTCACACCTCCACCTACTGCACCTACTGCTCCTAACACACACCTCCACCTACTGCTCCTAACTCACACCTCCACCTACTGCTCCTCCACCTACTGCTAACACACCTGATGGACAGCTCCACCTACTgctcct

Function

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0032259 methylation biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 2437 2009268 ~ 2048527 (+) True G92279
TU124224 lncRNA downstream 7295 2070299 ~ 2083911 (+) False G92278
TU124250 lncRNA downstream 9178 2072182 ~ 2074655 (+) False G92293
TU124226 lncRNA downstream 13606 2076610 ~ 2093751 (+) False G92278
TU124254 lncRNA downstream 14073 2077077 ~ 2077775 (+) True G92294
TU124220 lncRNA downstream 20916 2083920 ~ 2093751 (+) False G92278
XM_039811460.1 mRNA upstream 25999 1994819 ~ 2024965 (+) False LOC120565575
XM_039811459.1 mRNA upstream 57096 1980838 ~ 1993868 (+) True LOC120565574
XM_039811232.1 mRNA upstream 141965 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA upstream 141965 1893702 ~ 1908999 (+) False serpinc1
XM_039811456.1 mRNA upstream 161877 1867721 ~ 1889087 (+) True LOC120565570
XM_039811244.1 mRNA downstream 309050 2372054 ~ 2379851 (+) False reep6
XM_039811245.1 mRNA downstream 309050 2372054 ~ 2379851 (+) False reep6
XM_039811234.1 mRNA downstream 349227 2412231 ~ 2420605 (+) True LOC120565427
XM_039811235.1 mRNA downstream 360983 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA downstream 361029 2424033 ~ 2427127 (+) True LOC120565428
TU124125 other upstream 25033 1988808 ~ 2025931 (+) True LOC120565575
TU124195 other upstream 49971 1867652 ~ 2000993 (+) True G92264
TU124197 other upstream 54214 1867652 ~ 1996750 (+) False G92264
TU124120 other upstream 140903 1578955 ~ 1910061 (+) True G92201
TU124251 other downstream 9178 2072182 ~ 2076104 (+) True G92293
TU124333 other downstream 303116 2366120 ~ 2368316 (+) False G92333
TU124352 other downstream 308984 2371988 ~ 2380260 (+) False reep6
TU124353 other downstream 308984 2371988 ~ 2380260 (+) True reep6
TU124750 other downstream 470740 2533744 ~ 2582371 (+) True G92575

Expression Profile