RNA id: XM_039811258.1


Basic Information

Item Value
RNA id XM_039811258.1
length 1436
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC120565455
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3337832 ~ 3348216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGCTCGAGGTCCGGTTCTGTTGGAGCTCGGACGGCTCAAAGCTGCATCCTGGATCTCATCCAGACGCAACTCACAGGgaagccagATGAGTCGTGTGAGTGGGAACAGTTCAGGAGTCGTGGCTCCGCCcctcacacacacctcaccGTCATGTGACCCcgtgacctctgacccccccCTGACCTCCACCGCCCCCCCGCCCCTCAACAACAACAGGAAGTCCAGCAGCGACATCACTTCCTCCTCTAAGAGCACAGatgctGGCGTCCGTACTGTGGAGATAACAAGGAGTGTGAGTGACTCCCTCGGGGTGAGTATAGCGGGGGGGAAGGGCAGCCCGCTGGGGGACATCCCCATCTTCATCGCCATGATCCAGGCCAGCGGAGTCGCCGCCAAGACGCACCGACTCAAGgtgggcGACAGGCTGGTCAGTATCAACGGTCAGTCTGTGGACGGTCTGACACACAGCGAGGTCGTGGCCATGCTGAAGAACATCAGCGGAAACATCAGCCTGCAGgTGGTAGCAGACACCAACATCAGCGCCATCGCCACTCAGGTGGAGGGTTTGTCCAGCAGCTCCAATCTGTCTGccaacacggacacacacacagcagagccagaGGCTCCGCGGCCCCGCAGCATCAGCCTGGAGAAAGGCTCCGAGGGTCTGGGCTTCAGCATCGTCGGAGGGTTCGGGAGCCCCCACGGAGACCTGCCCATCTACGTCAAGACCGTCTTCAGCAAgggcgCGGCGGCGGTGGACGGGCGTCTGAAGCGTGGCGATCAGATCCTGACGGTGAACGGAGAGAGTCTGCAGGGAGCGACCCACGAGCAGGCGGTCGCCATCCTGAAGAAACAGAGAGGAACCGTCACACTGGACATCCtgtcataacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacagacgctccTGTGACTTCACCCACTTTGACTCTTGGACTACGACTCATCGTGGATCGTGAACTTTGAACTTCccaacatgcaaaaaaaaaaatgaagaaactGCATCAGACGGTTAAACAGAGTTTCTTAATCTTTGGCGTCGGGGCCACAGGAAGGTTTCTCTCCCTCCGACAGGTGTCTGGCTGCTACTGCGCCCAAAAACAGAGAGACATCGGACACGAAAATGTGGCGTTGGGAGCCAGAGAAAGGTTGAGAAACTCTGTTACTATGCATCTAATATCAGAATATCATCTAAAGACTAACAGAATGGAGTCACGATGGACGTTTAAATCAGCCTGCACTagttaacacagacacacacacacacacacacacacacacacacacacacacacacacatgcatacagacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125048 lncRNA upstream 151256 3186172 ~ 3186576 (+) False G92799
TU125034 lncRNA upstream 165650 3165682 ~ 3172182 (+) True G92786
TU125026 lncRNA upstream 174958 3138369 ~ 3162874 (+) True G92784
TU125032 lncRNA upstream 174958 3140314 ~ 3162874 (+) False G92784
TU125036 lncRNA upstream 201254 3135416 ~ 3136578 (+) True G92788
TU125085 lncRNA downstream 3551 3351767 ~ 3399599 (+) False G92826
TU125097 lncRNA downstream 3551 3351767 ~ 3353933 (+) False G92826
TU125106 lncRNA downstream 13876 3362092 ~ 3421936 (+) True G92827
TU125103 lncRNA downstream 51327 3399543 ~ 3464206 (+) False G92826
TU125133 lncRNA downstream 56847 3405063 ~ 3452057 (+) True G92839
XM_039811247.1 mRNA upstream 335293 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 478714 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 496973 2821642 ~ 2840859 (+) True LOC120565422
XM_039811224.1 mRNA upstream 743849 2586515 ~ 2593983 (+) True LOC120565421
XM_039811240.1 mRNA upstream 876235 2450531 ~ 2461597 (+) True LOC120565432
XM_039812269.1 mRNA downstream 281968 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 281968 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 281968 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 366703 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 478647 3826863 ~ 3854810 (+) True LOC120565880
TU125014 other upstream 205628 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 243422 3011766 ~ 3094410 (+) True G92773
TU124992 other upstream 243422 3011766 ~ 3094410 (+) False G92773
TU124998 other upstream 322979 3010674 ~ 3014853 (+) False G92773
TU124983 other upstream 354818 2982226 ~ 2983014 (+) True G92770
TU125102 other downstream 3551 3351767 ~ 3366729 (+) True G92826
TU125125 other downstream 137563 3485779 ~ 3490360 (+) True G92838
TU125164 other downstream 209781 3557997 ~ 3577980 (+) False LOC120565459
TU125178 other downstream 243889 3592105 ~ 3593384 (+) False LOC120565459
TU125177 other downstream 252762 3600978 ~ 3606825 (+) True G92848

Expression Profile