RNA id: XM_039811269.1


Basic Information

Item Value
RNA id XM_039811269.1
length 2348
RNA type mRNA
GC content 0.42
exon number 11
gene id agxta
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28953375 ~ 28959096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTTGACAGAAGAAGCCAGAGATAAAAGCGGAAAATGTTGTGACAGAGTCCTGACCTGAGGACCTCACTGGTCAGACAGAGAGGGTGTGCTCAGCTTACCTTTTACTTAACCTTCTCCGtagctttttgtgtttttcctgcGCTTGTCACACTGCTGGGAACATGTCGTCTGTCTCTATACCCCCACCAAAATGCCTGCTGAAATCGTTAGTGGTCCCTTATCGTCACATGTTTGGACCAGGACCTTCCAATGTTCCTTTACGAATCTTGGAGGCCGGGGCCAATCCTGTCATTGGACACATGCATCCAGAGATATTTAAGATAATGAGTGACATCCAAAGTGGAATCCAGTACATGTTCCAGACTGAGAACAACATGACTTTAGCAGTGAGCGGCACTGGCCACAGTGCTATGGAGTGTGCCATCTTCAATGCAGTGGAGCCCGGGGAGAGCGTACTGACGGCAGTCAACGGCATATGGGGAGAGCGAGCAGCAGAAATGGCTGAGAGGATAGGTGCCAGAGTAAATACCATTGTGACGCCCCCTGGTGGTTTCTTCACTAATGAAGAAATTGAGCAGGCTTTATCGAAACACAGGCCAGTGCTGTTCTTCCTTGCACATGGAGAATCTTCTACAGGAGTCTTGCATCCTTTAGAAGGCATCGGACAGCTGTGCCATAAGTATAACTGCTTGTTTCTGGTTGACTCTGTGGCATCATGTGGAGGGACCCCTCTGTACATGGACCAGCTAGAGATAGACATCCTATACACGGGCTCCCAAAAGGTTTTGAATGCTCCTCCGGGTACAGCACCCATCTCCTTCAGTGAGAGAGCATGCCAGAAAATATTAAACCGGAGGACAAAGCCTGTGTCATTCTTCTTGGATCTGAGTTGGCTTGCAAACTACTGGGGATGTGATGGCAAGCTGTCAAGAGTATATCACCACACAGGTCCAGTCACTGCTTTTTACTCTCTGAGGGAGAGTCTGGCTGTCCTTGTTGAAGAGGGTCTGCAGAATTCATGGGAAAGACACCAAGAAGTGGCTGAGTATTTCCATGCTGGCCTAGAGAGCATGGGTCTCAAACTTTTTGTCAAACCAAAAAAAGCAAGACTGCCTACAGTTACCACTATTATTGCTCCTCATGGATATGACTGGAAAGAGATCACAGCCTACATCATGAAAACACATAATTTAGAGATTTCTGGAGGGCTCGGACCATCAGTTGGCTTGgTGTTGCGTGTGGGGCTGATGGGATGTAACAGCAGCAAGGCCAATGTTGACATGGTGTTAGCAGCACTGAAAGATGCTCTGAAACACTGCCACAAGAGCAAAGTGTAACATGTTGCTGTTGGATGCTGTAAAGATAATCAAGAAGGAGATTGTAATAAATAAACCATTATTCTCAGTAGTTGTCTTGTGCAGCTTGAATGGGAACAGTGGACTTGTCTGCATAATAGTACCTTtagtgtggtggtggtgatgatggcgcagtggatataacacatgcctttggtgtgggagatctgggtttgattcccactgcgttacatcaaccaatgtgtccctgagcaaatCACTTAACTCCTAGTTGCTTTAGAGGCGTACAACCTCTGATATacagcaattgtaagttgctttggataaaagcatcagctaaatgaaatgaaattatttttgattttcagtctaataaaaactaataacTAATTTGACATGATAGTATTCCACTCTTAATGGTATATTAGATACATTTAACACAAGTCATATCCTACCCCCTTTTCTAGCAAATTGTATATTTACATCAATGGGTTTTCTCATGGTGGGCTTCTTTCATCATTCTTACTAATACCTCAAACTGTTCCTGTTGTTTTCTGTCCATATCCGAAGCTAAGTGTACTGATTATAGTAGAACATTAAAACATCATATTGactaaggagaaaaaaaactattctaCATATCCCATGAGCTGTAAAATTATTATAGCCTGCTTTTCATCCTGCTAccagaacaaaaacacacacacacacacacacacacacctttcatcGATATCAATACTGGAAGCTGCCTTTTTGTAAATTCAGTGATGTAATGCCTGTGCATTGTGGATTTATTTACCATGTGGATTTATTACTGGACTTACTTACTTTTATTATATCAAAAGTATTAAACAATGTGAATGGaatgtgcaaacacattttATAAAAGGAAACaatattgaaataaataaaaaggagttTTTATAATTTTGAATGTAATCAAATGTTTATAATGTTCCGGACTTATGTTATTATTCTGGACTTTGTGCAGAATGTGCAAAACTATGACTACAATTCCCTTTTTCT

Function

GO: NA

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133740 lncRNA upstream 87895 28859733 ~ 28865480 (+) False ralgps2
TU133704 lncRNA upstream 265257 28687882 ~ 28688118 (+) True G99108
TU133572 lncRNA upstream 382517 28569648 ~ 28570858 (+) True G99007
XR_005640191.1 lncRNA upstream 493165 28456993 ~ 28460210 (+) True LOC120565132
TU133794 lncRNA downstream 11391 28970487 ~ 28972086 (+) True G99189
XR_005640343.1 lncRNA downstream 33132 28992228 ~ 28992610 (+) True LOC120566147
TU133827 lncRNA downstream 60439 29019535 ~ 29034406 (+) True G99217
TU133866 lncRNA downstream 197588 29156684 ~ 29157107 (+) True G99238
TU133892 lncRNA downstream 479066 29438162 ~ 29438722 (+) True G99261
XM_039811395.1 mRNA upstream 66317 28865643 ~ 28887058 (+) False fam20b
XM_039811394.1 mRNA upstream 66317 28866615 ~ 28887058 (+) True fam20b
XM_039811389.1 mRNA upstream 87888 28775375 ~ 28865487 (+) True ralgps2
XM_039811390.1 mRNA upstream 87888 28775375 ~ 28865487 (+) False ralgps2
XM_039811391.1 mRNA upstream 87888 28781047 ~ 28865487 (+) False ralgps2
XM_039811270.1 mRNA downstream 58 28959154 ~ 28966583 (+) True dtymk
XM_039810900.1 mRNA downstream 83808 29042904 ~ 29065102 (+) True hdlbpa
XM_039810901.1 mRNA downstream 83808 29042904 ~ 29065102 (+) False hdlbpa
XM_039810223.1 mRNA downstream 307266 29266362 ~ 29268436 (+) True sox14
XM_039812006.1 mRNA downstream 367421 29326517 ~ 29331778 (+) True LOC120565897
TU133723 other upstream 178865 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 807050 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 868988 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2157636 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2934004 25991506 ~ 26019371 (+) False dot1l
TU133929 other downstream 704537 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1468407 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1851422 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2663602 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2670720 31629816 ~ 31631501 (+) True G99803

Expression Profile