RNA id: XM_039811274.1


Basic Information

Item Value
RNA id XM_039811274.1
length 3990
RNA type mRNA
GC content 0.56
exon number 28
gene id si:ch211-191a24.3
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7007170 ~ 7067934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTCTCAGAGAGAGAGTCTCCACCTCGATTTCTATAGACCAGTCAGACTTTCACTCATCAGGCTTCATATTGCTGTGATTTTCTTGTTTACTGCAACATCAGCAAAGGGCGCCCATGTGACCGAGATCAGTCATGGAGGAACCGCAGCGAATCGATCTGACCTACATCACAGAACGCATCATCACCATTTTCTGCCCTTCCGAATGTCCAGAAGAGCTCTACGTGCAGAACCTGGAGGAGATTATTCACATGCTGCAGTCCAAGCATGGACACCACTACATGGTCATCAACCTCTCACAGAAACACGAAACTCTCACCCGAATGAACCACAAGGTTTTGGATACAGGTTGGCTGGATCTCCTGGCCCCTGACCTGGAGCAGATCTTCAGTGTGTGCACGACGATGAAGAACTGGCTGCAAACACATCCAAAGCACGTCCTGGTGCTACACTGCAGGGGAGGTAAAGGCCGGCTCGGAGTTCTGGTGGCTTCTTACATCCACTTCAGCAACATGTCAGCCAGTGCAGACCTTTCTCTGGACCACTTTGCCATGAGGAGGTTCTACAATGACAAACTGTCCGCTCTGATGACCCCGTCGCAGAAACGGTATGTGTGGATGCTGGGGAGCATGTTAAAGGGAGGACTGAGGATGTGTCCCTCTCCGTCTTTCCTCCTGTGTGTTGTTCTTCACGGTCTTCCCAAAATAAGACCAGATGGAGCATGTTGTCTCTTCCTGAGAGTCTACCAGAGTCTACAGCCTGTTTACACATCAGCAGTCTACCACGTTAATGCGGCTCAGACAGACCGCCTCTACATTGTGCTCCAGCCAGCTCAGCTGCTCAAAGGGGACATCATGGTGCTTTGTTATGATAAAAACAGCCGCTCAGCCAGCCGGCAGCTCGTCTTCCGTCTCCAGTTTCATACGGGACTCGTACACGGAAACAGCCTGACCTTCTGTAAGGCGGACCTCGACTGTGCCAGTGAAGATCCCCGGTTCACAGAAGATGGAAAAGTAGAACTGTTGCTTTCTGACAGCCCTGAAAAGATAACAGGCAGAGAGCTGTGGCACAACGGACGCTGTGTGACCGTGGACTATGACACCTTGGACCCTTTGGTTAGAAGAGATTCATATCAAGACACGTCTTCTCTTGAAAAAGCTTCCCCTCATCTCCTGGACCCTGgactgaggaagaagagtagTGAGGAAGGGTCTTCGTTCCGCCTGACCACCAGCAGCCCCAGCCGCAGCGACCGAGCGCCATCTGCCAGCAGTGATTCGGGCCTGTCTGTTGCCTCACAGGGGCGCACCGGAGCCGCGCAGAGGAGAGGGGCTGCACGGGACAAGTATACCCAGGCAGGGAGGCTGCTCTCTGGGCTGGAATTTGAGATTGCTCAGCCGCTTCTGGAGGTCATGACTGAGCTTGCTGCGTCCGGCAGAGGGGAAGGGGAAATGACTGGAGACGAGTCTGGACTGGGACACACTATCAATGGAGAGGCTTCGTCCAGCGAGAGGGAAACGGATATATTAGATGATGAGGATGAAGCAGATGAAGCAGCGCCTGCTTCGGACCTGCCGAGCTCAAGCAGCATCTGCTCCCTCTCCTCTGAGAACCTGCCTGAAGCTCAGACATCAGCCCACGCAGAGTACTCCACACACTCCTGGGTTTGGCAGCAGCAGATGGTTGACGTCGTCGTCACCGATGCCTACCTTGGAGTCGATGGGGAGGAGAGGTTGAACAGGGTGAGGAAACAGCGCCCGCCGCCTCTGGTAGCGCCTGAGACACCACACCGAGGACTCAGCAGCAGGGAAGCAGTGCAGAGAGGGCTGGTGGACGAGGATGCCACGCAAAACACAGATGTTACAAACAGCGTGGACTCTGTCCATACTACGCACGCTTCGTCTTGCCAAGAAGAGGATTTGTCGTCGTTGAATACGGACATCGACGAGTCCATAGAACAGCTGAACCAGCTGATTCTGGATTTGGACCCCACCTTTGTTCCTGTTCCTACCCGCTGTTCCCCCCTGTCCCGCTCCGCCTCCCTACACACCAACGGCCTCAGCAACAACAGAAATACCCGTCAGTCAGGTTGGAGGCAGCAGATGCAGATCAGTGATGTGACCGACTATGCTGGTCTCCAAAGTCCAGGATGGAGGGGGGGTAGCGCTCAGAGCTTCAGAGGCTCCCCAGTCTACAGTCCCCCCTACTCACCAGCTCAGCATGGGCATCTCTACCATCGGGGACAGACAGATAGCTCTGACATTGTCCCTTCTACTCCGGCCTTCCCAGTGACTCCTCCGACGCCCTACATGAAACATTTCTCAGAGTTTTCCGAGCTCAGGACTGGTGGACAGTGGGACCAACACAGCTGGACACAAGATTCCCGGAGTTTCCTGGACAGTATGAACCACGCTGGCAGCTCTGCAGAGGGAGAGCTCTTCAGATCAGAAGTGTCGGCCACTCCTGCTTCCTGTCAGAGGATCTTTGGCTCCATGTGCTCCATGTCATCAGACagccccctcccacacacagacagCTCCACTCCTCCTCCTGTGTGGCACGACCGGACTCCAAACTCCCTGAACTCCCCGTTCCCCCCCCAGCCctcacctcctccctccctcagcACTCCCAATGCCCACAGCTCCCCGCGGGGGGCTCTGAGAGGCCCGGGCAGAGGCCCATGGGTCCGCGGGGAGACAGACAGCGGAGACTTGTCCTCCTTGTTGTTGGGGAACGGCAGCCTGGAGCACAGCCTGCTGGAGGCCATGGAGGGCCTCGGGGGTCTGGACCTCGGGGGAGACGGGCGCCTCCCTCCACTGCTGCCTGAGAAGAGGAGAGTGGGTGAGGGGGGGGAGCTTGGCTCCCGCTCCCCCTCTCTGAGTGGGTTTTCTAGCCCTTACAGCGGCAGCAGTCTCAGCATCCCTTTCTCATCCCCCATGACCCCCGACCCCCTCAGAGGACTCAGTGGGGCCCAGTCGCCCGGAGCAGACTTTGGCAGTAAGCAGGACACTGTGAAGTTTGTTCAGGACACTTCCAAGTTCTGGTACAAGCCCGACATTTCTAGAGACCAAGCCATCGCAGTGCTAAAGGACAAAGAGCCGGGCTGGTTCATCGTCAGAGACAGCCATTCGTTTCGGGGGGCGTATGGATTGGCCATGAAGGTGGCCACACCGCCTCCGTCTGTGTTACAACAGAGTAAGAAAGGGGACCCGTCCAATGAGCTGGTGAGACACTTCCTGATAGAGTGCACACAGAAAGGAGTTCGTCTCAAGGGCTGCCCCAACGAGCCGTACTTTGGAAGTCTCACAGCTCTGGTGTgtcagcactccatcactcctCTGGCTCTGCCCTGTAAACTCATCCTGCCTGACAGAGATCCGGTGGAGGAGCTGACCGACTCGCCTGTACAGACGGCGACAAACTCAGCAGCTGAGCTCCTCAAACAGGGAGCAGCGTGCAACGTGTGGTACCTGGGCTCTGTGGAGCTGGAATCTCTGACGGGACACCAGGCGGTTCAGAAGGCGACCACGATGACGCTCGCCATGGACCCTCCGCCTGCTTCCACCGTCGTCCACTTCAAGGTGTCGGCACAGGGAATCACGCTCACCGACAACCAGAGGAAGTTGTTCTTCAGGAGACACTACGCTGTCAACACCGTCATCTTCTGCTCTCTGGACCCACAGGGCAGGAAATGGACAAGAGGCAGCGGTTCTACTGCAAAGATCTTTGGATTTGTCGCCAGGAAATCTCAGAGTGAGACTGAAAATATATGCCACCTGTTTGCTGAGCACGACCCTGAGCAGCCGGCGAGCGCCATCGTCAACTTCGTCTCAAAAGTTATGATTGGGTCACACAAGAAGTGAGGAGAAAGAGACTCGCTGCAGAGTGACCAGCCTGGACCGGGGATCCACTTCCAaacccctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126598 lncRNA upstream 14008 6992856 ~ 6993162 (+) True G93834
TU126587 lncRNA upstream 29624 6975644 ~ 6977546 (+) True G93823
TU126583 lncRNA upstream 31802 6974307 ~ 6975368 (+) True G93820
TU126543 lncRNA upstream 127089 6879803 ~ 6880081 (+) True G93791
TU126542 lncRNA upstream 130677 6876151 ~ 6876493 (+) True G93790
TU126619 lncRNA downstream 59380 7127314 ~ 7130558 (+) False G93851
TU126620 lncRNA downstream 59380 7127314 ~ 7130751 (+) True G93851
TU126663 lncRNA downstream 63414 7131348 ~ 7134432 (+) True G93888
TU126671 lncRNA downstream 88401 7156335 ~ 7156719 (+) True G93896
TU126682 lncRNA downstream 165212 7233146 ~ 7235719 (+) True G93906
XM_039811272.1 mRNA upstream 35870 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039810252.1 mRNA upstream 283893 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA upstream 283893 6672071 ~ 6723277 (+) False ghrhrb
XM_039811997.1 mRNA upstream 366050 6627642 ~ 6641120 (+) True cyldl
XM_039812355.1 mRNA upstream 625572 6354892 ~ 6381598 (+) True rhpn1
XM_039811275.1 mRNA downstream 40215 7108149 ~ 7127272 (+) True igfbp3
XM_039811515.1 mRNA downstream 195613 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 285914 7353848 ~ 7379344 (+) True LOC120565797
XM_039812274.1 mRNA downstream 330204 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA downstream 330206 7398140 ~ 7413692 (+) False LOC120566053
TU126420 other upstream 638816 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 793153 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 967051 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2293985 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2713280 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 281876 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 830738 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1169436 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1169436 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2079228 9147162 ~ 9159695 (+) True G94199

Expression Profile