RNA id: XM_039811282.1


Basic Information

Item Value
RNA id XM_039811282.1
length 740
RNA type mRNA
GC content 0.53
exon number 5
gene id atp5f1d
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27090223 ~ 27100256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGTAGGTTACCAACGTCCTTGTCCTACCAAGCGCACACCGACTGCCTTCACGCAAGGGCTTGAGGATCTCTGTCATTCACTTGAACTTAAATAAAATCAGATTTTCAAACATGATGGCAGCAAGATTTCTCCGCCGTGCTCTCCCCGTGCTGAGGCAAACTCGCTCCTACGCCGAGGCCGTCTCCGGTTCCCCGCAGATGTCCTTCACTTTCGCCTCCCCGACACAGGTGTTTTTCAAAGAGGCCAGTGTGAAACAGGTTGACGTGCCCACGCTCACTGGTGCGTTCGGTATCCTTCCTGCCCACGTACCCACCCTGCAGGTGCTCCGGCCCGGTGTCGTCACAGTCTTCGGTGACGACGGCTCCTCTGCCAAATACTTTGtgagcAGTGGGTCAATAACAGTCAACGCTGATTCTTCGGTGCAACTGCTATGTGAGGAGGCTGTTGCTTTGGACCAGCTGGACATTGCTGCCGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGACTTGGCCGGCACGTCTGACGAGGCGGCGAGGGCAGAAGTTCAGATCAGCATAGAGGCCAACGAGGCCATCGTCAAGGCTCTGGAGTAGACCTGTGGTAATCTCTTGTGTTTCTTTGATGGAAATGAACGGTCAATCTGTGTTTCCAGCTCCGTCACGTCAGTGTCCAGAAGATTCCATGCTTGCTTTGTACAGTGgataaaattacaaaataaatttaTTAGGAAATACCTG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132998 lncRNA upstream 74036 27013306 ~ 27016187 (+) True G98545
TU132993 lncRNA upstream 91778 26997687 ~ 26998445 (+) False G98544
TU132991 lncRNA upstream 96168 26992898 ~ 26994055 (+) True G98544
TU133007 lncRNA upstream 141159 26940912 ~ 26949064 (+) True G98552
TU133001 lncRNA upstream 218659 26871344 ~ 26871564 (+) True G98546
TU133104 lncRNA downstream 169582 27269838 ~ 27271406 (+) True G98626
XR_005640341.1 lncRNA downstream 208684 27308940 ~ 27309804 (+) False LOC120566143
XR_005640342.1 lncRNA downstream 208684 27308940 ~ 27309514 (+) True LOC120566143
TU133113 lncRNA downstream 211513 27311769 ~ 27312218 (+) True G98635
TU133135 lncRNA downstream 258348 27358604 ~ 27358841 (+) True G98649
XM_039811361.1 mRNA upstream 154340 26878308 ~ 26935883 (+) True polrmt
XM_039810192.1 mRNA upstream 293936 26791729 ~ 26796287 (+) True micos13
XM_039811692.1 mRNA upstream 365822 26522344 ~ 26724401 (+) False celf5a
XM_039811509.1 mRNA downstream 20442 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA downstream 20443 27120699 ~ 27147156 (+) True midn
XM_039811440.1 mRNA downstream 272553 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811355.1 mRNA downstream 412899 27513155 ~ 27520341 (+) True LOC120565509
XM_039812035.1 mRNA downstream 477718 27577974 ~ 27584940 (+) True tmem161a
TU132947 other upstream 294484 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1070852 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1358046 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 1543134 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2216349 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 927716 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1037013 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1672132 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2563377 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 3327247 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile