RNA id: XM_039811307.1


Basic Information

Item Value
RNA id XM_039811307.1
length 2759
RNA type mRNA
GC content 0.45
exon number 13
gene id efcab7
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12703144 ~ 12717685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCCAAACCCTGCGATTATTTCCGTATCACCTCATAGGGTCGACTACGGTATTACATTAGTTTTAGCTGGAACTGGAAAGTTAACGTTTGTTTCTTCTGTGTCGATTTTGATTAACCCCGATTAGTTTTTGCAGAGACGGTTACCTAGCAACTGCCAGCGAGAGAGCTACGGTGTTTGGCAAAATGTCACTGCTAAGGCGGATTTGATTCAATAAAATGCATCTCGCATGCTTTCAGATTAATTTTACGGTAtggtgaaaatgtaaaaaaaataatagcattTAGCCCAAATTAGCTTCCATATGTGGCTGTCGCCTGGATTCTAATAAGCTGGAGAGCGAGAGTGCTAAATTAGCTTTGctaacagtaacgttaacgttacccaCCGGGTCGatctgtttattcaaagatgtCTTCTCAAGAGTTACTTCGTCCtgctgatgaagaggaggctttCTACGTGCAGTGCAGAGCTGCATACCTTGCTGTGTTCAGATCTAGTTTGACGTATATAACTTCGAAACAGCAGCTATGTCGTGCTCTCCAGCAGGCTGGTAGAAATCCAACCAATGCAACTCTCAATAAATACTGGACCCAGAGAACATCCAAACTGAACTTTGATGACTTCTGTGAGATTCTTAAAAATGAGAAGAGAACTGAGGAAACAGAGCTGATGAGAGCCTTCAAAAAGATAGATGTGAACAGCGATGGCTACATTTCACACAGTGAACTGGAGAAGGCCCTCACCACTaaaggagagaaaatgaCCACCGAAGAGGTGAATGCTATTTTCTCATTGGCTGACATCAACAAAGATGGAAAACTGGACTATGCAGAATTCTGCAGATTGCTTGTGTCTACAGCAGAGCAGTGTCAGATGGCTGCTTTGGAGAGGCTCGAGGCTAACGCCAAGCTGAAGAGACAGAACTTTGGCAGTCAGTCATACAGCCCTCCGAAGAGCTCAGTGTCATcggcatcagcagcagcagcacaagcGGCAGCGACTCTCTCTCAGCCTCCAGAATCAGACACCACACTCAAGAAAGAGAGCCGATCATCCTCCCGTCCTTCTTCCGCTCGCAGTAGACGGTCGTCCCTGTCAAACTCAGTCACAATGACATCCAGCAGTACTAAGGGCAGCAAAATCCCAGAGCCTTCAGGCTTACAGGAGTGGCATCACAGTTATATGAAGGGCTGTTTCTTCTTGGAGGATGATGGGAGTATCGGCTCTCTACAGTACCAGCTCCACGTCCCCCAGACAACTAACGTCTACCTAACCATTCAACCACTCAGCTTCAGCCACGGACCCGACAAGCCTTCTTCATGGATGACAGTGGACACAGCTCTTTTTGTCATGTCAGCTGGTGAAATCAGAGAGGAATCAACTTTAGTGTGTTTCACTGAGTCGAAAGACAAAgaaAAGTATGTTTGGAAAGGAGAATTGCATGCTGGGACTTACTACCTGCTTCCCTTTACCAGTGGCTGCAAACTAAAGAAAAGGAGCAAAAAGAGCCTTTCTAATAAACCGTTAGAGCTCATCTACAGGACTGACACTGGAGAACTAGACCTCACCAGGGagctcagGGAGGTGCTGTCTGACATCTTTGAGGTGATAGACCTGGATGGGAATGGCTTGCTCAGTCTAGAGGAGTACAATTTATTTGAGCTAAGGACCAGTGGAGAGAAATGCGACAAGGATGCTTGGGCTGTCTGCAAAGAGAACTTTGATATGAGAAAGAACCAGCTAACAAAGCAGGGTTTCATGGAGCTGAACTTAATGGAGGCCACGGAGAAAGATGGAGACCCTGCAGACCTGTGGGTCACCCTGGAAGCCATGGGCTACAACCGAATGCTGGAGCTGGTAGAGGCTTGTCCATTCCAGATAGATGTGCACTGTGAAGGCACTCAGCCATCCATCCAGCCACTCAGTATGGACTCAGGGCCCAAACTTCTGATCCAGGCCCTCCAGAAGTCCATCACAGCCAGGACAGGGGCCAAAGCACTGAGGGGACAAGACAACGTCTTCATCTACACCTACCGAGGAGAACACAGGATCTCCTCCCTCATAGCCAACAAGTCCAACCAGAAAGTGACTGTCCATGTAAACAATGAGCAGAGCAGGaactgctgcagcagcagaggcATGAGTGTGTTTGCTGTTGAGGTGCCAGCCAGGACTAAGATGGTCTGCCAACACATCCTGCCCATCAATGAGAGACAAGATTGGACCTACAACTGTGTGGAGACCATACTACCCTGCTAGTAAAACTGTACTCCTGTCACTCACCTATGCTAATGATACAGATAAGCGATGGCCGGAAATGATTCATAAACCAGTGGTTTCCAATAGGATACAAAACAAATAGAAACTGTTCTATATCCACTGGCAATGTGAAAACTGTGTGACTGGTTATTTGTTTATCTGTTATTTTACTGTAACTAAGAATGTCCAAAAGGAACACTGCATAATCATTTTAACTTTTAGAAGCCCCATGTTCAAGGCTTACCTGTGAGTTTTATAATATGTCAGACATCAGGAGCTGAGACCTTCTGCCTGCTTGTGGTAAGAACTGTGTTTCAGAAGCTCTGTGACTTGATGCATCAGAGGTGTTAACTATTAACGGCAGCGAGAGACGGTCACTGTAGTGATAAAGTACAGCTGAAAATGGTTGTTACTGTTTTGCATGTGTGACATGTTTCCAAACATTTCAAAATTCCTTTTACaataattaacattttaaatgtatgaaGTGCAAA

Function

GO: NA

KEGG:

id description
K23852 EFCAB7; EF-hand calcium-binding domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127958 lncRNA upstream 260064 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 261283 12353673 ~ 12441861 (+) False lrp8
TU127967 lncRNA upstream 345125 12311823 ~ 12358019 (+) False lrp8
TU127963 lncRNA upstream 506528 12161638 ~ 12196616 (+) False lrp8
TU127883 lncRNA upstream 783107 11916631 ~ 11920037 (+) True G94813
TU128119 lncRNA downstream 147330 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 148227 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 277550 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 381102 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 390004 13107689 ~ 13112320 (+) True G95027
XM_039811305.1 mRNA upstream 12886 12670221 ~ 12690258 (+) True alg6
XM_039811306.1 mRNA upstream 12886 12670381 ~ 12690258 (+) False alg6
XM_039810268.1 mRNA upstream 39251 12661919 ~ 12663893 (+) True foxd3
XM_039812170.1 mRNA upstream 180710 12512616 ~ 12522434 (+) True atg4c
XM_039812171.1 mRNA upstream 182999 12512606 ~ 12520145 (+) False atg4c
XM_039811826.1 mRNA downstream 2406 12720091 ~ 12730969 (+) True pgm1
XM_039812265.1 mRNA downstream 25120 12742805 ~ 12865842 (+) True ror1
XM_039812266.1 mRNA downstream 25120 12742805 ~ 12865842 (+) False ror1
XM_039812267.1 mRNA downstream 25120 12742805 ~ 12857625 (+) False ror1
XM_039811947.1 mRNA downstream 178602 12896287 ~ 12994764 (+) True cachd1
TU127781 other upstream 1258611 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1454497 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1754898 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1761900 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2543337 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 287891 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 455340 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 661713 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1901673 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2092683 14810368 ~ 14916606 (+) False dennd1b

Expression Profile