RNA id: XM_039811316.1


Basic Information

Item Value
RNA id XM_039811316.1
length 2341
RNA type mRNA
GC content 0.48
exon number 1
gene id sox2
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10112982 ~ 10115322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCGAAGCCATTTATTCGCTGACAGCCCCGTCACATGAATGGTTGTCTATTAACTTGTTCAAAAACTATCTGGAGTTGTCAAGGCTCAGGCGGACAGAGGCGAAAAAGTAGtttgttgatgctttttcgGAGAAGCGACTGGAGAAGTTTTGTGGACACAACATAGCAGGGACCTATTGGGAGAAGGCTCTTTGTCACTCATACTCACACACAAGCTCTGACACACACTCAccgagaggaagagagagagagagagtgtgtggagACGCGGCTTGGTGCTGGTTGTTTTTGTCCAGAGAAAAAGTTGCAGAGAGAAATCGACAGGTAACttttagcagcagcagcctgcgCTCCTCACTGTCCTCTCTTTGGCTCGTggagtttgtctctgtgttttctttttttcctctgctcGGGAGCTCCAACTAAAAGCTGTTCCTGATGTATAACATGATGGAGACTGAACTGAAGCCCCCAGCTCCCCAGACCAACACGGGGGGCTCGGGCAACACCAACACGTCTGGCACCGGCCCCAACCAGAAAAACAGTCCGGAGCGGGTCAAGAGACCCATGAACGCGTTCATGGTGTGGTCCCGGGGCCAGAGGAGGAAGATGGCCCAAGAAAATCCCAAAATGCACAATTCGGAGATAAGCAAGAGACTGGGCGCAGAGTGGAAACTTCTGTCGGAAAGCGAGAAGAGACCTTTCATCGACGAAGCCAAGAGGCTCCGGGCCCTGCACATGAAGGAGCATCCGGATTACAAATACCGGCCCCGGCGGAAAACCAAGACCCTCATGAAGAAGGACAAGTACACCTTGCCCGGCGGGCTGCTGTCTCCCGGAGGGAACGGGATGGGAGCTGGGGTCGGGGTGGGGGCCGGCCTGGGCGGTGGGGTGAACCAGCGGATGGACAGCTACGCGGCGCACATGAACGGCTGGACCAACGGTGGCTACGGCATGATGCAAGACCAGCTGAGCTACCAGCACCCGGGGCTGAACGCGCACAACCCGAGCCAGATGCAGTCCATGCACCGCTATGACATGAGCGCCCTGCAGTACAACAGCATGACCAGCTCCCAAAGCTACATGAACGGCTCCCCGACATACTCCATGTCCTATTCCCAGCAAACCACGCCGGGGATGACCGCCCTGGGCTCCATGGGGCCCTCCTCGGTGGTGAAGTCCGAGTCCAGCAGCTCCAGCCCGCCCGTCGTCACCTCGTCTTCCcaccgggccgggccgggctgcCAAAGCGGAGATCTGAGAGACATGATCAGCATGTACCTGCCCGGGGCGGAGGTCAGCGATCAGACCGCCCAGACCCGGCTACACATGTCCGGGCACTACCAGAGCACCGTGCCCGGGACGACGATCAACGGCACGCTGCCGTTAACACACATGTAAGAGAcacaaagcagagagagaggtagagagagagagagagagagagagagaaaaaaaaagaacttttaTAAGAGAAACTGTGGACTATTAACGTTGGACTATTTTTGTACAGAAAAATTTCGGGGTGGGAAAAGTTGTATAGAAGTCTCCAGGAAAAAGGACACacgactctttttttttctttcattttattcTAAGGAAGCTCTAGAGGAACGGTAGGAGATCCCCTCTTCACTGGTGGATGAAGTTTGGAAGACTAGAAAGTGGGAGTCgcaatcaaatgttttattattgcaATCACCTTTTGTACAGTATTTATCAAAGAAACATTACAATCAGATGAAATTGTTTGTTAAACTGCAAGaggttgcatttttcttttttctttttcatataaGGCAACGCCAgttctgcaaaaaaaatattaaaagtgaAGATGGCAGAACTGGAATTATGTGGGGAGCGATCAGTTATGCTCCTTTATTACTGCAAACATTGGAAAGAAAAGGGACATAAAAACGAAGCAGgtaatactgttttttttccatttaaggTCAATATtactaaacattttaatttctttaaaaaagttAAGACACTTTTTGTTCTCATACAGCTTAAAATATAGGTTGTTAATTTATATTTCCGTCTCCCACTTTTCATCTGTTAGAGGTATGACGCTTGTGCTCTTTATTTTCTAATTGATTTGTACAATTTCTGTATATTTACTGTgatattttaagtttttatttcgAAATTCATTCCCgtagttgtattttaaaaattgTGGCCTGCAGTACGCAGAAGCCAACCACtccatgtatatatataccGGAACTAATACCATCCTTATAACAGTTACAGTTTCAGCTgagtatattttttttcaatatgcagtttgaaatgaataaattttGGAAATTTGGATACTTGAAA

Function

GO: NA

KEGG:

id description
K16796 SOX2; transcription factor SOX2 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127377 lncRNA upstream 129138 9981422 ~ 9983844 (+) True G94400
XR_005640304.1 lncRNA upstream 200882 9908907 ~ 9912100 (+) True LOC120565916
TU127336 lncRNA upstream 210860 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 419949 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 433245 9673431 ~ 9679737 (+) True G94259
TU127383 lncRNA downstream 67872 10183194 ~ 10183408 (+) True G94405
XR_005640263.1 lncRNA downstream 88818 10204140 ~ 10297258 (+) True LOC120565491
TU127376 lncRNA downstream 181427 10296749 ~ 10297122 (+) False LOC120565491
TU127406 lncRNA downstream 223914 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA downstream 230875 10346197 ~ 10358788 (+) True G94427
XM_039811649.1 mRNA upstream 133240 9967354 ~ 9979742 (+) True fxr1
XM_039811652.1 mRNA upstream 133240 9967354 ~ 9979742 (+) False fxr1
XM_039811653.1 mRNA upstream 133240 9967354 ~ 9979742 (+) False fxr1
XM_039811650.1 mRNA upstream 133240 9967354 ~ 9979742 (+) False fxr1
XM_039811654.1 mRNA upstream 133240 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 248140 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 325236 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 325236 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 325262 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 325263 10440585 ~ 10450982 (+) False kng1
TU127361 other upstream 164752 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 209793 9902285 ~ 9903189 (+) True G94376
TU127191 other upstream 233784 9817621 ~ 9879198 (+) True G94281
TU127611 other downstream 801603 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 831654 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1133253 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1313709 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2890254 13005576 ~ 13100445 (+) True raver2

Expression Profile