RNA id: XM_039811377.1


Basic Information

Item Value
RNA id XM_039811377.1
length 553
RNA type mRNA
GC content 0.49
exon number 5
gene id uba52
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15293595 ~ 15295680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACTTTTATTCCCAAGGAAACAAGCAAAAGGAAGTGACGTTTGACAGCGTCAGCCTTTTCCGCTCTCTTTTCATTGAGGCTCAGCTAGCGGCCGGCCTGCAAACATGCAGATCTTCGTGAAGACGTTGACGGGGAAGACCATCACCCTTGAGGTTGAGCCCAGCGACACTATCGAAAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCTGATCAGCAGCGTCTGATCTTCGCTGGCAAACAGCTTGAGGATGGACGCACACTGTCTGACTACAACATCCAGAAAGAATCCACTCTGCATCTGGTTCTGCGTCTGCGTGGTGGAATCATCGAGCCTTCTCTCAGACAGCTGGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCCCGTGCTGTCAACTGCCGTAAGAAGAAGTGTGGACACACCAACAATCTTCGCcccaagaagaagctgaagtaGACCTTTCGCAAGAATTGGCTCTTAATGCCATTttgtgttaaaataaatgtgagAAAATGAT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02927 RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640228.1 lncRNA upstream 25410 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 25410 15231371 ~ 15268185 (+) True LOC120565370
TU128812 lncRNA upstream 361514 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 361514 14931069 ~ 14932081 (+) False G95496
TU128807 lncRNA upstream 367992 14923952 ~ 14925603 (+) True G95493
TU129007 lncRNA downstream 604 15296284 ~ 15297193 (+) True G95640
TU129053 lncRNA downstream 92318 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 178914 15474594 ~ 15478157 (+) True G95710
TU129122 lncRNA downstream 333289 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 337233 15632913 ~ 15633568 (+) True G95729
XM_039811130.1 mRNA upstream 140018 15027011 ~ 15153577 (+) True rabgap1l
XM_039811131.1 mRNA upstream 140018 15027011 ~ 15153577 (+) False rabgap1l
XM_039811132.1 mRNA upstream 140018 15127592 ~ 15153577 (+) False rabgap1l
XM_039811133.1 mRNA upstream 140018 15135829 ~ 15153577 (+) False rabgap1l
XM_039811153.1 mRNA upstream 215124 15072598 ~ 15078471 (+) True gpr52
XM_039811369.1 mRNA downstream 47986 15343666 ~ 15350593 (+) True ddx49
XM_039812446.1 mRNA downstream 83835 15379515 ~ 15382779 (+) True lsm4
XM_039812466.1 mRNA downstream 174967 15470647 ~ 15472763 (+) True LOC120566177
XM_039812071.1 mRNA downstream 202346 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA downstream 202352 15498032 ~ 15505221 (+) False mpv17l2
XR_005640328.1 other upstream 376989 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 379562 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 672182 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1910851 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2073223 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1024814 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2559957 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2570868 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2572986 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2576030 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile