RNA id: XM_039811382.1


Basic Information

Item Value
RNA id XM_039811382.1
length 4332
RNA type mRNA
GC content 0.52
exon number 22
gene id kdm4b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16320494 ~ 16376449 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTAGTTTCTGAGGTGGGCGTGACTCCGAATAGCCtcagctagctaatgttagaggAAAATCCAACCAGGGAATATTTACAAAACGAAACCAAATAGATTGAACAAAACAGGGAGACGACAATACTTTGCTGCAGGAGGTTTACCTGCAACCCTTAAAAGATCCAATGGCTACTGACACCCAGGAGCCAGCATTAGCTGAAATCCCAGACACCGCAGTGACCTCGGAACAGGATGCTGCTCCAGATGTCGCCCCGGCTCTGCCTACAGACCCAGATGTGGCCCCAGTCCTTGTTCCAGGTTCTGAGCTGCCCCCGGCCCCTCTGCTGCCAAACAGCACCAAGAATCCCAGCTGCAAGATCATGACCTTCCGGCCCACCGTGGAGGAGTTCAAAGACTTTGCCAAATACATTGTCTACATGGAGAGTCAAGGAGCTCACCGTGCTGGCCTGGCAAAGGTGATTCCCCCTGAAGGCTGGAAGCCACGGAGGTCCTACGACACCATTGAGGGCATGGTGATTCCAGCTCCCATCATGCAGGTGGTGACCGGACAGTCGGGTCTGTTTACCCAGTACAACATCCAGAAGAAGTCAATGACAGTGGGCGAGTACCGCAAGCTGGCCAACAGCAAGAAGTACTGCACACCACGGCACAAAGACTTTGATGACCTAGAGAGGAAGTACTGGAAGAACCTGACATTTGTGTCACCCATTTATGGTGCTGATGTCAGTGGCTCCATCTATGATGAgGACATTCAAGAGTGGAACATTGGCCATCTCAACACGCTGCTGGATATGGTGGAGCAAGAGTGTGGCATCGTCATCGAGGGTGTCAACACTCCCTACCTCTACTTCGGCATGTGGAAGACCACATTTGCCTGGCACACTGAGGACATGGACCTCTACAGCATCAACTACCTGCACTTTGGACAGTCAAAATCCTGGTATGCCGTCCCACCTGAGCACGGCAAGAGACTGGAGAGGCTGGCACAAGGCTTCTTCCCCGGCAGTTCCCAAGGCTGTGACGCCTTCCTTCGCCACAAGATGACGCTGATATCTCCATCCATCCTGAAGAAATATGGCATTCCTTTTGACAGGATAACTCAGAATGAAGGGGAGTTTATGGTCACCTTTCCTTATGGCTACCATGCTGGCTTCAACCATGGCTTCAACTGTGCAGAGTCCACAAACTTTGCCACCCTGCGCTGGGTGGACTACGGCAAAATGGCTACCCAGTGTACCTGCCGTAAAGACATGGTGAAGATCTCTATGGACGTGTTTGTGCGCTGCCTGCAGCCGGATCGCTACGAGCTGTGGAAGCAGGGCAAAGACATCACAGTGTTGGACCACCTTAAGCCCACAGTGCTCAACAGCCCCGAACTAGAGCGCTGGAGGGAGCATCGTGTAAACTACAGAGCAAATGTCCTGCGAAAGGCCATGCAGAAGATGAAGCAGGTGCGTCGTCTAAAGCTGGAGGAGGTGAAGGTGCTGGCACAGGAAGGCATTGAGCTGAATGCTGCCGAGTACCAGCGTCaggtggaggagaaggaggcCCAGCGGaggcaggagagagaggagcgtCTGGCCAAAGAGGCCATTATGACCCTGGAGGCCATGGAGCGTGAGGAGCGCGAGGCTGCCGAGCGTGAGGAGCGCGAGGCTGCCGAGCGCACTGCTAAAGAAGCGGAGACTCCAGCTGTAGAGGCACAAGAACCCAAGGCCAAATCAGAGAACCTGATCGAGGACCCAGAGAAAAAGAAGCataaaaagccaaagaaaatttCAAATATCCACAACGCCATCACTGGGTTCGAGGAAGCATTTGAGCAGTTTGCTACATCCAACATCAAGACTTCAAAGAACACCATGGCCAGTCATTCAGAGCTGGGGAACCTTCTTGCTCCGAGACAGAGTGATATCCCAGCAGACAACAAGCTGGATGTGAGTGCCACCCAGGCATACTCCAAGGTGAAGATGCCAACAGAAGTAAAAAAGAGTCGCCGTCACCCCCTCAGCAAGCCACCCATGCGCTCCCCTCTGTCTATCCTCAAGCAAGACCCAACCAGCGACAAAGAACTGTCCTCTCCCATGCCGCTGCACAGTGACATGAAGAAACAGGAGCACCTGTGGCAGAATCACTCGCCCAACTTCCTAGCAGAAAAGGCCTTCAATGCTGCAGTGGCAGCACTGCAACCACACTGCGCTATCTGTTCACTCTTCTGTCCCTACCCAAAGCCACATAAAGACGCTTTTGTTGCGAATGACACCCAACGTGCTTCCCTTCCCCGTCTGACTCGTCCCCTGGTCCCAGAGATGTGCTTCAGCGTTGGTGCAGGCAACACTGAGCCTCCGCCCACCAACTATCACATTGGAGAGGATGGAACCAGTCCTCTGCTCTGCTGTTCATCTTGCCACATGCAGGTTCATGCCAGTTGTTACGGTGTAAAGCCAGACTCCGTCAGCGATTCCTGGATGTGCTCCAGGTGTGCAGCTGGAGCCTGGACAGTGGAGTGTTGTCTCTGTAACTTGCGGGGAGGAGCTTTGAAGACTACCACAGACAACCGGTGGGTCCATGTCATCTGTGCAATCGCTGTAGCTGAAGCTCGCTTCGTCAACGCCATTGAGAGGGAGCCGGTGGACGTCAGTGCCGTTCCCGATACACGCAAGAATCTGAAGTGTGTGTTCTGCCATGGCAAGACTGCCAGTCAGAACCGCGGCGCCTGCATCCAGTGCTCATTCGAGAACTGTGCCACTTCCTTCCACGTCACCTGCGCCCAAATCGCCGGAGTAGTCATGACACCAGCCGACTGGCCCTACGTGGTGTCCGTTACCTGCCAAAAGCATAAACGGGTCCATCCAAAGCCTCGGACAGCACCCAAAGGCCCGCAGCCTCTGAACCTGGGCCAGAGGGTGATTGGACGCAACAGTGACGGCTGGTACTACCACTGTACCATCATCGGCATGGCAACGCAGACGTTCTACGAGGTCAACTTTGATGATGGCTCATACTGTGACAACCTGTTCCCAGAAAACATATTAAGTCATGACTGCCTGCGTACCGGTCCTCCTGAGGTGGGGGAGTTGATTGTGGTCAGCACGACTGAGGGTCAGGTCGTCAACGCTTCCTTTGTCAGACAGCACACCCACAAGTCCTACCAGGTTGAGTTTCTGGACCAAAGTCAGCTGATACTAAAACACTCCGAGATCCATCAGCTTGACCAGGAACTGCCCAAGAGGGTCCGAGCCAGACTGGCCATACCTATACCACAGGAGGGGGTTTCATCAGCAGATGAAGCCCAAGCAGCCAAACGCCGCCGCCTGCCGTCTGGCCCAGCCCTGCACGCTGAAACCCCCATGGAGACAGCCAATAAACCCGCCTACACCCTAACCACAGCCCCAGtagcagcaccagcagcagaACATCAAAGTATTCATACACTGCCGACCTCACAACCTTTATCCCAGCCCATCACAACCTCACATGATGCCCCCGCCCCAACCACTGGTATTCAGATGGACGCTGAGACCCCAATGGACACGAGCGTCAACCTCGCTGACGCTCTAACTGAGTCAAGCCTGGCCTCGGACCCCATGCTGACTCTGCAGTCGACCCCTTTTTCAGTCGATGTTTCCTACATGGAGAGCCTCCTCCAATCACATTTTCCTCAGGACAGTAGCCCCGGACCCCTGTATTAAAAAAACGACTCCACTATATTATTACCCGGCCAGTGGAGGCTGAGCCAATAGGAAGTAAGCTAATGGAGGTGGATTCTACGGAGTGCTGTATTATGGACAAAAAAATACGTTTCCTCCACCGGCTCTGAGAGCTAAGGGCGGGAGCAGGAATAGATACACAAGCACTCttttaatgcatgttaattttctattttttagtTAATGTATTTGCAGTGGTGCTTTAGCTTGCTCTGAAGCAGCAGCTAAAGaaggcatttttatttttgacataattattattattatttgttgttttttaggccttttgggttttttttccatttttggtTAGCTGTTGTGCTTTTCTCCTCCATCTTAATATGAATACGCCTTTGGGTGGTATCAACTCCATACCTCGTTGCATTAATTCAATAACAGCACACTCGTTTTCTTTTGTACAGGAAGCTAATTACTATGACTGCCTCTCAGTCCGGTGgacttcagtttttctttttgaatCAAATAACCAGCAACAAAATATCTATTTTTCAATCCAGCCATTAATGGCTTTGAAActgttttggaaattaagtGTCACATTGTCCATCTGCAGGATATTCTCAGCAAGGTGTTTTATTGTTGGATtgcaagagagaggga

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06709 KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129522 lncRNA upstream 30074 16289823 ~ 16290420 (+) False kcnn1b
TU129418 lncRNA upstream 150650 16166202 ~ 16169844 (+) True G95952
TU129417 lncRNA upstream 150650 16166278 ~ 16169844 (+) False G95952
TU129381 lncRNA upstream 192554 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 338996 15980690 ~ 15981498 (+) True G95877
TU129574 lncRNA downstream 126696 16503145 ~ 16503811 (+) True G96070
TU129581 lncRNA downstream 216427 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 299758 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 395520 16771969 ~ 16772170 (+) True G96086
TU129594 lncRNA downstream 501427 16877876 ~ 16878081 (+) True G96088
XM_039812009.1 mRNA upstream 2996 16301923 ~ 16317498 (+) True uhrf1
XM_039811580.1 mRNA upstream 19494 16289884 ~ 16301000 (+) True kcnn1b
XM_039811581.1 mRNA upstream 31593 16285698 ~ 16288901 (+) True ccdc124
XM_039811576.1 mRNA upstream 35509 16278045 ~ 16284985 (+) True cluap1
XM_039811532.1 mRNA downstream 81738 16458187 ~ 16459800 (+) True LOC120565628
XM_039811969.1 mRNA downstream 550170 16926619 ~ 17177885 (+) False ptprsa
XM_039811978.1 mRNA downstream 550170 16926619 ~ 17177885 (+) False ptprsa
XM_039811973.1 mRNA downstream 550170 16926619 ~ 17177885 (+) False ptprsa
XM_039811979.1 mRNA downstream 550170 16926619 ~ 17177885 (+) False ptprsa
XR_005640328.1 other upstream 1403888 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1406461 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1699081 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2937750 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 3100122 13173025 ~ 13220372 (+) True G95046
TU129832 other downstream 1479188 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1490099 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1492217 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1495261 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 1495829 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile