RNA id: XM_039811395.1



Basic Information


Item Value
RNA id XM_039811395.1
length 2432
RNA type mRNA
GC content 0.52
exon number 9
gene id fam20b
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28865643 ~ 28887058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACAGATCAGATCAGTTCCAGCCTTTTTCAAGCTGCTGTTTGATTTGCTGCAGCTCAGTAGGGATGACTGAGAGAGACTGACTGTTGATGGAAGGTGACCTCCTGTTTGCTCAGATTGTAGCGCAAGGGATCGGCAAGCTTCACCGTCCTTCAGAAGAGTTTGTCTGACGGGGCAGGTGGGTGGGCGGGCCACAGGTAGTTGCGGGAGCCATGCATCAGGGGTGAGGGAGATTCGCTGCGGGGGACACACACAGCGTCGGGTGAGGAGGGGGTCGTGGCAGGTCGGTGTGGAGATGAAGCTCAAACAGCGCATGGTGGTGCTGTGTGCCGTGCTCCTCCTGCTGGGCCTGGCCAAGATCTTCTTGCTGGATGGAGGCGAGGGCTCTGCAGCCAGCCGGCGGGATCTCAGAGCATTTCGCAAGATGGAAGCTGGCCTTACTCTGTCCCGGGGAGCTCGCCTTACCCACACTCTCCAGTCTCCGTGGGAGATAGCAAGCCAGTGGGTGGGCCCGAGAGAGGTGTACCCTGAGGAGACCCCAGAGCTGGCTGCTGTGCTCTCATCCCTCAGCACTGCCAGGATAGAACGGGCAGATGTGGGCTATAAGGGCACGCAGCTTAAAGCTCTGCTGGTGCTGGACGGGGGACAGAAAGTGGTCTTCAAACCCAAGAGATATAGCAGAGACTACGTGGTCGAAGGCGAGCCATACGCAGGCTATGACAGACACAATGCAGAGGTGGCTGCTTTTCACCTGGACAGGATCCTTGGGTTCAGGAGAGCACCTCTAGTGGTCGGGAGGTACGTCAACGTGCGAACAGAGATTAAACCTGTGGCCACAGACCAGCTGCTTAGTACCTTCCTAATGCAGGgtaATAATACATGCTTTTATGGAAAGTGTTACTACTGTCGGGAGAGCGAGCCAGCGTGTGCAGAGGGGGAGATCATGGAGGGGTCGTTAACCCTTTGGCTGCCGGACGTCTGGCCTttgcagaaacacagacacccCTGGGGACGCACATATAGAGAGGGGAAATTGGCCAGGTGGGAGTACGATGAGAGTTACTGCGAGGCGGTGAAGAAGATGCCTCCCTACGATGCAGGGCCGAGGCTGCTGGACGTCATCGACACGGCCATATTTGATTATCTGATTGGGAACGCTGACCGGCATCACTATGAGAGTTTCCAGGACGACGGCGGCGCCAGCATGCTCATCCTGCTCGACAACGCAAAGAGCTTTGGGAATGCCGCTCTGGATGAGCGAAGTATCCTCGCGCCACTCTATCAGTGCTGCATGGTTCGTGTGTCCACATGGAACAGGTTAAACCTACTGAAGGGTGGAGCTCTGAGTTCAGCGATGCGCCAGGCCCTGGCATTCGACCCCATCCACCCGGTCCTGGCTGAGCCACAACTCGCAGCCCTGGACCGGCGTCTGTCTGGAATCATAGCAACCGTCAAGCAGTGTATGGAGGCACAGGGCCCCGATAACGCTCTGATAGAGGACCGAATAAACCTCCCACACCCCTAGCTCTAAGGGACAGGAGAAAACGGTGCAACAGGAACAGCCAGGACTTTACCCCACACGTctggagaagaggagagggcCCTGGTGTTAAAGAGATGCAGAGTGAGTAAATGGATGGCCAAGGGTGGAACGGAGACTGTGTATTTCTTCCACcctggtctgtttttttttttttttattttatttgtcacgCTGATGAGAGGTTCTCTTAAAAGGAATCGCTGGATTCAAAGTGGTGTCACCTTCTACTATATAAACTTTTTCTCAGGACTGTTGTACACTATAGGACGGTATCAGCTGTaagaagccccccccccctctactCCGCCTGCCTTGTGCCAAACGCTCCCTCCCAGTCCAGCTGTTCCCTTCTCGACTAAGCAGGAAGATGCAGACAGTCAGAGGAGCCGGAGGGAAGGTGAAAATGAGCCACCAACGTCTCGATGGAAGACACTGTACAGCCACGTTGCAGGCTGTTCGAAGCTTACAGTCAAAGAAATTGAAAAGTAGATTCCTGTTGAATTAACAGGAAATTGAatccatttttctttcttttttttttctcgaaaTGAAATTGAACTTTCACTGGAAGGAAAAGAGAATTAACTCAGCCCTTCCTCCATCATTGTGTACATATTTAACTAAGTAGTGACATAGAATTATGAGACGAAAGAATATACATTTGTggataataatattaaataaaattgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcgtgtgtgtgtgtgtgtgcgcgcgagcGTGGGTGTGTGAATGGAAGAGTGCCATATTGTGCCATATATAAGAAAAGCTACTGACATGACAGGCTTGAAGTGAGGGGAAGCAGAGGGTGGTGGTTTATCTTCATCATTAAACTATGATCTATTTAATTGCA

Function


GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU133740 lncRNA upstream 163 28859733 ~ 28865480 (+) False ralgps2
TU133704 lncRNA upstream 177525 28687882 ~ 28688118 (+) True G99108
TU133572 lncRNA upstream 294785 28569648 ~ 28570858 (+) True G99007
XR_005640191.1 lncRNA upstream 405433 28456993 ~ 28460210 (+) True LOC120565132
TU133553 lncRNA upstream 405477 28449543 ~ 28460166 (+) False LOC120565132
TU133794 lncRNA downstream 83429 28970487 ~ 28972086 (+) True G99189
XR_005640343.1 lncRNA downstream 105170 28992228 ~ 28992610 (+) True LOC120566147
TU133827 lncRNA downstream 132477 29019535 ~ 29034406 (+) True G99217
TU133866 lncRNA downstream 269626 29156684 ~ 29157107 (+) True G99238
TU133892 lncRNA downstream 551104 29438162 ~ 29438722 (+) True G99261
XM_039811389.1 mRNA upstream 156 28775375 ~ 28865487 (+) True ralgps2
XM_039811390.1 mRNA upstream 156 28775375 ~ 28865487 (+) False ralgps2
XM_039811391.1 mRNA upstream 156 28781047 ~ 28865487 (+) False ralgps2
XM_039811392.1 mRNA upstream 156 28809042 ~ 28865487 (+) False ralgps2
XM_039811388.1 mRNA upstream 91090 28772362 ~ 28774553 (+) True LOC120565530
XM_039811269.1 mRNA downstream 66317 28953375 ~ 28959096 (+) True agxta
XM_039811270.1 mRNA downstream 72096 28959154 ~ 28966583 (+) True dtymk
XM_039810900.1 mRNA downstream 155846 29042904 ~ 29065102 (+) True hdlbpa
XM_039810901.1 mRNA downstream 155846 29042904 ~ 29065102 (+) False hdlbpa
XM_039810223.1 mRNA downstream 379304 29266362 ~ 29268436 (+) True sox14
TU133723 other upstream 91133 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 719318 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 781256 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2069904 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2846272 25991506 ~ 26019371 (+) False dot1l
TU133929 other downstream 776575 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1540445 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1923460 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2735640 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2742758 31629816 ~ 31631501 (+) True G99803

Expression Profile


XM_039811395.1 Expression in all Baseline Samples

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XM_039811395.1 Expression in each Bioproject

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XM_039811395.1 Expression in each Sample
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