RNA id: XM_039811397.1


Basic Information

Item Value
RNA id XM_039811397.1
length 6011
RNA type mRNA
GC content 0.47
exon number 19
gene id dnajc6
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13163705 ~ 13204369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAAAGCACCCGGCAGAATATTTCTTTCCCCTAGAAAACAGAGGAGACCGGTCGTCCTCTCCTCCTCGGACATGTGGTtcacccagcagcagcagttgtagcagccagcagcagcagcagcagcggcggctGTGGCGGTGGTGGCGGCGACATCGCAGCGTAGCCTACGTCTTTGGAGCTTCTTTTGtcctttattttctatttttttcttcggTAATGAGCTTGCTGGGGGCCTACAAGAAAAAGACCAGTTACGATGGCTATGAATCTTTGCAGTTGGTCGATAGCGGCGGAGATAGCTTCAGTGTCGGCagaggaagcagcagcagcggcggcggcAGCGTCACACTGGCAGGCTCCAGAGCGGCCACCCTTGGACCGAAGGCAATCCCGCTGAGAGAGGAGGACtgcagcaccatggacagctcaGAAATGGATGCCAATTATGGCGGAGGACTGTTGGATATGGTGAAGGGAGGAGCAGGGAAGTTCTTCAGCAACTTCAAGGACAACTTGAAGGACACGTTGAAAGACACCTCCACCAAGGTCATGCATCAGGTTTCCACGTACACTAAAGGGGAGCTGGACATTGCCTACATTACATCACGGATCATAGtGATGACCTACCCTGCGGAGTCAGTGCAGATTGGCTACCAGAACCACGTAGAGGACATTCGGTCCTTCCTCGACAGCCGCCATGCCGACCACTACACTGTTTTCAATCTATCACAGCGCAACTACCGCGGCGCCAAATTCTCCAATAGGGTTTCAGAGTGTAATTGGCCTTCTCGCCAGGCTCCCAGCCTCCACAACCTGTTTGCTGTGTGTAAGAACATGCACAACTGGCTCAAACAGAATCCCAAGAATGTTTGTGTCATCACCTGCTCGGATGGCCGTGCTCTCTCTGGTGTTTTGGTTTGTGCCATGTTCTGCTTCTGCCACCTCTTCAACAACCCAGTTCCTGCCATGCAGCTGCTCAGCGCCAAGAGACCAGGTTCCGGCCTCTGGCCCTCACACCACAGGTACATAGGCTATGTGTGTAGCATGGTGTCAGAGAAGCCCAGTCTACCCCACTCCAAGCCCTTGATGATCAAGGGTCTCACCATAACTCCGGTCCCCTGCTTTAACAAGCAGCGCAGCGGCTGTCGGCCCTTCTGCGATGTCCTCATCGGGGAGACGAAGATCTTCACCACTTCACAGGAGTATGAGAGGATGAGAGAGCACAGGGTCCAAGAGGGTAAGATCGCTTTCCCTCTGGGTGTGAGTGTGCAAGGAGACGTTATTGTTTCAGTCTACCACATGAGGTCGACCATCGGAGGACGTCTGCAGGCCAAGGTGTCCAACACCCAGATCTTCCAGATACAGTTCCACACTGGCTTCATTGCGCCTGGTACCACCATGTTAAAGTTTAACAAacCAGAGCTGGATGCATGCGACTCTCCTGAGAAGTATCCCCAGCTTTTCCATGTGATACTGGACGTGGAGGTGGAAGGGGTGGACAAGCAAAAGGACCTGACGCCGCCGTGGGAGCAGTTCCCAGTTAAAGACCTCAACCCCAACGTACTCTTCTCCTGCCACCAGGAGCACCAGGACGCACTGGCTATCGCTGATGAGATGGAGGGATTGGATCTGGAGGAGCCAAGTCGGCCCCACGGAGGTCCAGACGGTCGGGGCCACGGCGAGGAGAGCGAGCCCTCGGATGATgatatgctctctctctccagccaACGAAGCAACGCCAGCACGGCCCCCCAGAAACCCGACCCTTCTGCGCCGATGCCTGCCGCCTCTGCACCCGCTGAAGAAATGGATCTTCTTGGCCTCGATGGGGAGGAGATCAACTGTCCTTCATCTCAGCCCCCGTCTGCTGCAGCCGCAACCACTGACCTCCTAGGGGACTTGTTCGGGGGCCCACCCCAGCCAACCAGTGGGGCGTCATCTGCCCAGTCCACACCACAGAAAGTAGTCCTAAACACTGCCTCGCCATGTCCCTCTCCTGCGCCATCAGGTTTTGATCCCTTTGGGACGGGTCCCATGCCTAAGCCTCAGGACATGATGGGTTCATTCCTTGGACCAGGTAACATGGGGCAGCCAGACCCCTTCCTGCATGCTACACGCTCTCCATCACCCACCCTGCAGCCTACAAGCTTGGGCCGGAGTTCCCCAGTCCCGCCCGCAACCCCAACCGTCAACATTCAGCAGCTAAATGCAAAGGGAGGATGGGACTGGACCAGACCTGCTACTACAAGCACAGGCTTTGGTATGGGCAGTCGGTCAGCGACTACAAGCCCCACAGGCTCGGTCCACAGCACCCCCACCCACCAAACCCAGCCAAACACCCTGGACCCGTTCGCTGACTTAGGCAACCTCGGGGGAAGCCTTGGAGGTTCTGGCTTTTCCAGCAAACCCACCACTCCTACTGGAACTGCCCCTTCCGTCCCTCCCATGGGCTCCCCATCGCGACCTCCTCCGTCTCCCCAGCACGCAGAAGGGTGGCAGTCCCACACAGGAGCCGGCTTCCCCTCGTGGCAGCCAGGTGCTGGAGGCGGTGGAGGATGGCCACATCAAGGACAGGGCCCTGCCCCGCAGCCAAAGCCCAGCCCCAGCCACACCCCCATGCCTCACACATCGCCCCAGAACCGACCCAACTACAATGTCAGCTTCTCTGCAATGGGAGGGGGCTCGCCTAGCGCAGGGGGCAAAGTACAGGCTGCCATGGGCTCTAAGCCCAAAGCCTTTCATGCCAACTTTGATGACCTGCTGTCTGGTCAGGGCTTTGCAGGGGCCAAAGAGAAGAAAGGGCCCAGGACTATAGCAGAGATGAGGAAGGAGGAGATGGCCAAAGAGATGGACCCTGAGAAAATAAAGATTCTGGACTGGATCGAGGGGAAGGAGCGTAACATCCGTTCTCTACTGTCCACCATGCATACTGTGCTGTGGGAGGGAGAGACGCGCTGGAAGCCTGTGGGCATGGCTGACCTGGTTACTCCAGAACAGGTCAAGAAGGTCTACCGCAAAGCTGTCCTGGTCGTCCATCCAGATAAGGCGACAGGACAGCCCTATGAACAATATGCCAAGATGATTTTCATGGAACTAAATGACGCCTGGTCAGAATTTGATAGCCAAGGACAAAAACCTCTCTACTGAATAAATAGTGAGAGGAAGTGAGCGAGCAGAGGATGTCCCTCCTGATTATGTCATCCAATCCTAAAAATGTGTCCCCACTTCTTGTCAACATACTACAGCCGCACCCTACAACATCTGCCTTTATACCTGTGCTTTGACCCATACTTCTCTtcgcacaaacaaacacagaacatCCAGTTGATCTGCAAATACGGAAAAAGACTTACAGAGCTCCAGTGACCAACAGTGTGACAGAACAAATGACTCCCCGTAGCTAAAATGTACCTACCTAAGGTATGTATGTGGTACAACATAGTCCTTCCTTGTTGAGTGTCCTTAGCCCTGAAACCAACCCACCAATCAAAGCAGAGTCACCGGCACGTctagaaaaaacaaaagaaacgcTTGATTCAGAGGAGACAGATCAAAAGACAGCGAGATAAGAGAAAAACACATCAGGGAGTAAACTGATCAAAATTTTCACAGACTGCTCTAAATAAGGGATTCAGAGCACCAAATAGTCTGTAGGGcaaaaaataatcatttaaCATCAATCAAGCCAGTTACCCACAAAACATTCTGTTGTGCTTTATGTGGAAATTGAATCCATGACCAGTTCTGTCATATCAAATTCACGCTTCTTCATGGAATTGAATGTTCTTAGAAGAACAGATAAGAGAAGCAGCGTTAAGTTATATGTTTTTCACTGACAAACCTGTTTTCCATCCAAAACAAGCTGTTTGGAGGTAAACATTAACAATCAAatttaaaaagtgcaaaaagAATGAAAGCATATTGCTTTTAACAGTAACTCTGATTACAGGTTGGCTTCCATCTCTTATTTATTAAGTCTGCTGAGGataattgaaaatgaaaattacgGGGCTctacaataaaaacacacaccagaAGGCTGCGACAATTTCAGTTTCTGAGTTAATATTCATATGACAGATTAACAAAAAAGGTGTTTGTACTGTAGGAGAATGCTTTTTCATTGGTGTGTCTGATGTAATCAAGCCTTGTGTGTTTCCATGTCTGCAGGGAACTGAGGATTGTATAATGTATTTTAGGATGAGCACATGTACAGTTCCATACATGAAGCACCTCGAGGCCTCATGTGTACTCACTCGTACAGTAACATGTATTTTTGCGAGGGAGCTCTGTGAAAGCACAAACTTTTACTCGGTACAGCGTTGAAGGAAAGCCATTGTTATTTATATGTTCATcttcattttgttgttttgtttatcaGAGGTTTAAATGAACTGCACATGTCATCAGCTAACTTATGTAAAGGACATGTTTGGGATATTTTAGACCATTATAGGTTAACTCATTAACTGACTGTCAAGCAAAACAAGGGAATCATTTGTAAAACTATATCACAATTTTTGAGTGTATAACCTTTTGTAGTCTGCAATAACTTTTTCCAAACAACAGAAGTGACGCTTGTGTGCTGCTGTCGTTACAAACTTCCCACAATGCAAAAAGAATCGTGGGTTGATTTTGCAAAGATGGGAAATGTTCTCATACTATAAGAGGATATATCGTAATGATTGAATTTTGTGCTTTACTGGATCTCACTTCTTCATATCTCGAATTGTTCATTTCACTCAGATCCTACATATATTTGCTGTCATTACAACACTAATTTGCAATGAttgcaacatgttttttttgttgaattaatttatgtaatttgtttacgtttgtgagaCATTTCTGTCACAGCACTGACACTTTTATTTATAATGATCATGCAGCTTTTTGTCTGGATGAGTAATACTTACACTATTTCATATCAACACACATGTCTGTATATGTTGCAGGTTTGTAATAATTTAAATCTAGAAGAGATATGAATTCTTTCCAAATAGTTTCACTGATATATGGAAATTGACTCCTAACATTTTCTCCTTGTGGAAAAAGTATTTCACACTCCTGGGATGAAGTCCATGGGCAAATgacaaacatgcaaaaacaaaacaaaatgtatttactgATTAGCAAGTCGAAACTGAAGCAATTCTGAatttatttttgaataaaaTAGGTTTGATAGGAAACTCATATGATCTCATAACATCCATTTAACAACAGAGCTTTATTGTAAAGTGCTGTTGTATTCTGATGTATGACATCTGttataataaaaatgtgtttaaagtccattttcacacatgcacatttagCAGAATATTTGCCTTCACATTTTCATAAACTTCTTTATACCGTTTTCATGCTGTCATTCTCTCTGTTTTAACCTTGTTAATGTTTTTCCCTTTGTTGGACTTAATTATTGCCCAGGATTCCCAGTTTGTTCATCTGTGTTGAGGATGTTTACTACACTGACCAGTGGAAAAAGATTATGACTGCTCTAAAGCGCTGTTTCTTCAACTGGACAGAGCGTCTTGACTAAAATGGGTCCCTGAAGAAGACTCTTGGTCTCATGTTGAAAATGTTAAACTCTGATCTAGAGGCCACTGCTTTCTTTGGCGACTTATCAAACACAGGAAGTATGTAGTATGTGCTTCTGTGCTCTATTTACACCGAGGACCTACATGTGAAATAACCCTCATAAGCTCCCTCGCTGACTGAATTCTCTGAAATCGTACGGCTATGTTAAAAAGCTAACCTCTCTATATTGTAGTCAATGGATGTGTGTTGTTTGAAGTTGTGGTATGTATGAATACAGAATTGGATACAGACTACTGTACGTTATGTGTTTGCCTGTCTGCTGTTCAAGTATTACTAAACTGTTTAAAAATGATGTTCATGTGTTCCTTTTCAGGTCTGTTTACCATTACAGGATGTACATAATGATCAAGTGCGgtgcacaaaaataaatagtaaacaGAAAACAGAGGCAGCATTCATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 21776 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 56251 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 68233 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 172917 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 302320 12865912 ~ 12866251 (+) True G94997
TU128265 lncRNA downstream 131365 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 131365 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 168075 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 168104 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 186454 13390823 ~ 13399617 (+) False LOC120564965
XM_039811774.1 mRNA upstream 9930 13149850 ~ 13158641 (+) False ak4
XM_039811773.1 mRNA upstream 9930 13149851 ~ 13158641 (+) True ak4
XM_039810256.1 mRNA upstream 73165 13005568 ~ 13095406 (+) False raver2
XM_039811947.1 mRNA upstream 173807 12896287 ~ 12994764 (+) True cachd1
XM_039811755.1 mRNA downstream 7112 13211481 ~ 13258561 (+) False lepr
XM_039811754.1 mRNA downstream 26752 13231121 ~ 13258561 (+) True lepr
XM_039811888.1 mRNA downstream 89497 13293866 ~ 13305234 (+) True ttc22
XM_039811887.1 mRNA downstream 96116 13300485 ~ 13305234 (+) False ttc22
XM_039811889.1 mRNA downstream 96116 13300485 ~ 13305234 (+) False ttc22
XR_005640174.1 other upstream 68126 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1724038 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1919924 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2220325 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 2227327 10916925 ~ 10941244 (+) True G94598
XR_005640172.1 other downstream 175029 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1414989 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1605999 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1605999 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 3116125 16320494 ~ 16341048 (+) False kdm4b

Expression Profile