RNA id: XM_039811409.1


Basic Information

Item Value
RNA id XM_039811409.1
length 3196
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC120565538
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34066115 ~ 34093575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCgcagtttctgtgctgtgtaatAGTACTTCCGGTGTACGTTCCAGGGACAATTTTGTGAATTTAGTGACACCTAAAACGAGTTGAGTGATCTCTGGACTATTTATTAAAGTGCAGCGGGTTCGCTGTAACTGAAGCCAAACATGGATATCCCAAATCCCCCCGAAGATCAAGAACTGAAGAATGTCATTGACAAGCTGGCCCAGTTTGTCGCTCGGAACGGGCCAGAGTTTGAAAAGATGACAATGGAGAAACAGAAGGACAACCCTAAGTTCTCCTTCCTCTTTGGGGGAGACTACTTCAGCTACTACAAGTGCAAGCTTGCTATAGAGCAACAGCAGCATCCCTCTACCCAAGATGGGGAGGAGTATAAATCTGAAGAAATGTATAACCCGGGCGCCAAAGACGCGGTTGATATCCCTCCATCGATGCCAATGATTGCTCCGCCTCCGATTCCTCCGCCTGCCGCGCCCTCTATGGATGAGCTCATCCAACAGAGCCTATGGAatctgcagcagcaggagcagcatatgcacacactcagacagGAACAAGTGACTGCAGCCATATCTCTTGCTATGGAACAGCAGACCCAAAAACTGCTGCTGGAAACTCAGTTGGACATCACAGAGTTTGACAACCTCCTGCAGCCCATTATAGACACCTGCACCAAAGACGCCATCTCTAACTGGATGTTCAACAACGCCAAGTCTCCACTGCACTGTGAACTGATGACATCACATCTTCGCAACCGCATCATTGCTGATGGAGCGCATTTTGAGCTCCGCCTCCATCTCATCTATTTAACCAATGACGTTCTCCATCACTGCCAGCGGAAGCAGCAGAAGGATTTGTTGGCAGCGCTGCAGAAGGTTGTGGTTCCCATCTACTGCACCAGCTTTCTGGCTGTAGAGGAAGAGAAACAGCAGAAGATCACCAGGTTGTTGCAACTGTGGGAGAAGAACGGGTACTTTGATGAGGAAACCATTCAGCAGCTCCAGAATCCAGCACTGGGGCTCGGCCAGTACCAAGCGTCTCTGATAACAGAGTATGCTGCGGCGGTGCAGCCGATCCAGCTGGCCTTCCAGCAGCAGATTCAGGCTTTGAAGACCCAGCACGAAGAGTTTGTTTCCAGCCTGAAGCAGCAGCCACAGCCTGCCCCTGTAGCGCCGCTAGCTACCTCTGCTGAGCCTGAAAAGGCCCCACCTATGACCACAAAAGCTGgggatGTGAAGCCTCCCATGTCGGGTCCTCCTCCAGGGGAGTTTGATGGAGCCTCATCCAGGCCACAGGACCCCAGCAACCCCAGTGGACCCTCAGATATCCCCTCTAACAAACCTGGGTGGTATGACCCCCAGCACATAGGCCCCTGGAACCCCAACCAGCCGCCTCCTTTTGACCCAAACCAGCCCCCCCCTCCCTGCCCTCCCTGGAACAGCCATGAGGGGATGTGGAATGACCAGAGGGACCCAGGAAACTGGAGCGGGGGTCCACCCAGAGAAGGAGGCCCCTGGAGCGGTCCAGGTGGGTCTGACCCAGGCCCTCCATCTTGGAACTCATATGACCAGCAGCCACCATGGGGGAACCAGCCTGACCAGCCTCCATGGGGCCAGAGGGAGCCCCCATTTCCTCCACGCATGCAGagACCTCCCCATTTCAGAGGGCCCTTCCCTCCTCACCAGCAGCCACCTCCTTTCAACCAGCCCCCACCACCGCACAGTTTCGGACGCTTCCCGCCACGCTTTATGCAGGACGACTTCCCCCCCAGACACCACTATGACCGGCCGCCGTACACCCCACACCGCTTTGACTACGCTCAGGGAGATTATCCCGGAGCTGAGTGCAGAGACATACCAGGTCCTCCCCCCCACCACCATCCCAGTCAGAGGCTCCCTCCCCCAGGTATGGGGGCTGAACATCCTCCCTGGGGTGGAGGCCACCAGCCGGATTTTGGCCCACCCCCACACGGCTTCAACGGCCATTCCCCCCACATGCGTCATCGGCAGCATCCAGTCCAGGACGACCCCAGTCTGGTGCCTAACGTACCCTACTTTGACCTGCCAGCTGGTCTAATGGCTCCTCTGGTCAAACTTGAGGACTGTGATTACAAACCTCTGGACCCCAAAGATATCCGGCTGCCCCCTCCCATGCCACCCAGCGATCGCCTGCTAGCTGCTGTGGAAGCTTTCTACAGCCCTCCATCCCATGATCGGCCCAGGAACAGTGAAGGCTGGGAGCAGAACGGCCTGTATGAGTTCTTCAGGGCCAAGTTTAGAGCCAGGCGGAAAAAGGGACAGGAGAAACGCAACAGTGTCCGTGGAGGCAGTCGCTCCAGGAGTCACAGCAGAGGGCGATCTTCGTCTCGCTCCAGCTCTCGCTCCTCAAAGTCCTCCAGGTCGCGGTCCCGCTCGTCTCACTCCCACTCCCGCAGCCGCTCTCGCTCCTACTCACGCTCCAGGTCCAGGAGTAGATCCAGGTCCTCTCGGAGTCGCTCTCGCTCCAGATCCCGTTCCCATTCACCCGCCAAGAGACAACATGGCGCCAAATCCCAGAGCTCCTCCCCTCCCTCCACATCAGTGATTGGTGTCCCTCCCCCCAAACCGATATCAGATATGAGGCTAGGGGAGGAGAATAAGGGCCATCAGCTGCTGATGAAGATGGGCTGGAGTGGTTCAGGTGGTTTGGGGGCCAAAGAACAGGGCATCCAGGACCCCATCAAAGGAGGAGACATCAGGGATAAGTGGGACCAGTATAAAGGTGTGGGGGTGTCACTGGACGACCCTTACGAGAACTATCGCAGGAACAAGAGCTACAACTTTGTCGCACGTATGAAGGCACGGGAGGAAGTCAATCGTGAACCTACCGAGGCCCCTCCAGCTGAGTGATGTCATCAAATAGCGTCAAACAACTCCTCGTCTCCCCCgtcgcctcctcctccaccaagGATCTGAATTTCACTGTCAGTTTTCAATCCAGAATAGATCGATGGATAGATGTTCTCTACTGACCACAAAGGGAAATtattttgatactttttttCATGTAATTAGTAATTCTATGGCAATGTGAGTCTGTCATTTTGTTGTAGTATTAAAATATATCCCACAAAACAAAAAGACGTGAATATGAAATCAGCATTTTTATCTCTAGAAACGCAGTTGatataacataaataaacacatcTCTGACTAACAAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134826 lncRNA upstream 861369 33204180 ~ 33204746 (+) True G100043
TU134811 lncRNA upstream 986274 33078937 ~ 33079841 (+) True G100028
TU134794 lncRNA upstream 1179966 32881680 ~ 32886149 (+) True G100013
TU134775 lncRNA upstream 1472930 32592939 ~ 32593185 (+) True G99994
TU134768 lncRNA upstream 1558905 32436847 ~ 32507210 (+) False nlgn1
XR_005640305.1 lncRNA downstream 127048 34220623 ~ 34222131 (+) True LOC120565927
TU134936 lncRNA downstream 127087 34220662 ~ 34222122 (+) False LOC120565927
TU134947 lncRNA downstream 210515 34304090 ~ 34304346 (+) True G100148
TU134967 lncRNA downstream 356706 34450281 ~ 34450515 (+) True G100161
TU134961 lncRNA downstream 408989 34502564 ~ 34504367 (+) True G100159
XM_039811419.1 mRNA upstream 2540 34033465 ~ 34063575 (+) False si:ch211-247n2.1
XM_039811929.1 mRNA downstream 287172 34380747 ~ 34384027 (+) True LOC120565861
XM_039811944.1 mRNA downstream 360806 34454381 ~ 34456956 (+) True LOC120565866
XM_039811945.1 mRNA downstream 360808 34454383 ~ 34456956 (+) False LOC120565866
XM_039810431.1 mRNA downstream 434993 34528568 ~ 34661669 (+) False arhgap39
XM_039810430.1 mRNA downstream 434993 34528568 ~ 34657908 (+) True arhgap39
TU134878 other upstream 187784 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 796955 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 1187500 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 2422669 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 2434614 31629816 ~ 31631501 (+) True G99803
TU134982 other downstream 411068 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 2133512 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 2379963 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 2401909 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 2439151 36532726 ~ 36534539 (+) False smim24

Expression Profile