RNA id: XM_039811431.1


Basic Information

Item Value
RNA id XM_039811431.1
length 4818
RNA type mRNA
GC content 0.45
exon number 11
gene id pias4a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26244296 ~ 26257447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTCTATCAAAGCAGGCTCTGCGTTTCATTGGTGAGAGACTACCCTTCGTCTCTGACTCTCGCGGTACCGCTGCACGAAGATGGCGGCCGAACTGGTGGAAGCGATGAACATGGTCAAAAGTTTCCGGGTCTCAGACCTGCAGACGCTGCTGGCCTCAATGGGCCGCAGCAAAAGTGGGCTGAAACAGGACCTGGTGGGGCGTGCGCTGAGGCTAGTGCAGACCGAATACAGCCCGGAGCTTCTGAAGAACGTCAGGCAGCTCTACGAGTCGCGCTTTCCCAAAACATCTGGCTGGCTTGCAGCGCGGCGTCCAGAGGGCATCCCAGTTGCCTACTCATCCCTCAGCTCCTCCCCCACTGCCACCTCTCAGGGCGCAGACTACCTCAACGGGATTTCCAAACCGATCCCCACACCTGCAGCAGAGGTCAAGCTGGTGCCGCTGCCCTTCTACCAAACTTTGGAGACACTGTTGCCTCCAACAGAGCTAAtTGACGTGAACAGTGAGAAACTGCAGGACAGTCAATGCATATTTGAGTTAACACCGAACCAAGCAGACCAGATCAGAAATGCAAGtgaGCTTCGTCCAGGAATCCGATCAATCCAAGTGGTTCTTAGACTCTGTTACACAGACTCCATTGGTGTCCAGGAGGACCAGTATCCTCCCAACATTGCTGTCAAAGTCAACCAGTCCTACTGTCATGTGCCGgGCTATTACCCTTCTAACAAGCCTGGCGTTGAGCCTCGTCGCCCTTGTCGTCCTGTTAACATCACTCCCTGGTTGCATCTCTCCAATGTCACCAACAGAGTCACCGTCACCTGGGGAAACTTCGGCAAGCGGTACTCGGTGGCAGTGTATTTAGTGAGGGTTTTCACTGCAGCAGACCTCTTCAGCCAACTCAAACTCTGCTCTGTTGAAAGTGCAGAACGCTGTCGTGAACGCATTCAAGACAAACTACGTTTTGACCCAGAGAGTGAAATTGCGACTACAGGCCTCCGGGTTTCTCTTATCTGTCCATTGGTGAAGATGCGGCTCGGTGTGCCATGTCGAGTTTTAACTTGTGCCCATCTCCAGTGTTTCGACGCAGTCTTCTTCCTGCAGATGAATGAGAAGAAGCCCACATGGACTTGCCCCGTCTGTGACAAGCCTGCTCCCTTTGAGCTGCTCACTATTGATGGGCTACTATCTGAGATTCTGAAAGAGACGAGCGAGGACATTGAGGAGATTGAGTACTTAACTGACGGCTCCTGGCGACCCATCCGAGATGACAAGGAGAGGGACAGGGAAAGAGAACGCAGCAACACACCAGAGTATCCTGTTGTTGATATATGCATTCCTGAGGCAAACGGTCATTCACCGGCCCACAGCAGCACCAGCGTGGGGATGGCAGGAGGACCTGCTGTGGCACCGGGAGGAGGTGCAGTGGTAGATCTGACTCTTGACTCCTCCTCTGAGGAGGAAGGGGGCGGGGCAGGAGGAGACAGTGAAGACACTGAGGACAGCGCCGACAGTCCTGCCCCGAAGAGGGGCCGATACAACTACGACAAGGACCTGGTCACTGCCTACTGACCCCACAGCTCTGTCCCCtcacagactgacacacacacagagacaagagAGGCAGGGGGCTAAAAGGACAGGAACACAGTAATCCACTAGATGCAACAACCCTCCCTTATGCCCAAACGTCAGAGCCTTTTAGCAGCTCGGGTTATATCCAGTCAAAACAGACATACACTCAAACATGCACTGTTAATGAATCTTCAATCTGGAGTGATTAGGATTCCTCTTTGTACTGTACACCACTGGACGCAACTCTCTTTTTGGCCAACCGTCACCTTGCAGTGAATATCTGTACCGTCCTGCCTCTACTTAAGAGACTGAATGGATCGGGCACCCCACCACCACCGCCacccttccccctctctctccagaCTATTCCCTCTCTACCACCTCATCTCTGTTTGTATTTGACTTGGAATTACAGGCTCTTTTAGCCATGGGCGTTCCATCTGTGCGTCTCtgatttttgtcacatttgtgATGAACAGGCAAGTTAAAAATGGAGGCTCCTCCGTAGCTTTTGGTAAAAGGTCAAAAACAAGTAGTGGAAAAGAGCATTCAAAATTTGGGTGAGGACAAGGCAGAGATATCTGGAGTGTGATGCAAATTAAAATCTCTCccattgtgtttatttgtttgtttagaGAATTAATTCAAAGCTTGAAAGGGTTTTTtcaggaattttttttttttattatgaaagGGCAGAACACAATACTGGCCTCAGTGTGTGATGCTTTCCATTTATATTTGTCCTTAGCTAAAGAGAACCTACCTCAGTCATAAAAACTTAGCAGACTGACCAGAGAGTAGCTTAGAAAGAAGCGGAGGACAAGAATTGATTTGTCCTTCTGAAGTCAATTTTACACTGGAGATTTTGTTTTcctacatgtttttgttttttaattccaTCGTTCCATGCAGCTCTGTTCCCTCTGCAGCAACACAATCTTTGTTAAAGGGTGAGATAGTTTGTGGATAACCAAGCTAACTAGGCAAAATGcaaaaaggttgtgggtggaACGCTTCCCCTCTGTAAAACAACCGCGGTTATTGCGCTACAAGTAACAGGATTTATTAGGAGTGATATATCAGCATTGTGTATTGACGTAACTCATCCAAATTACTGTGCGGCAGCTGTGCCAAAGCAGATCTATTTTAGGAATTCAATGACAGGAAATGGTTGTGAGATTTTGGTGCCTTTTTCGTTGAGTGGTGAAGATAGGAGCCCATTGTTTAAGGCTGGCTGAGCTGGCCAGCAGATGAGACCCCAGTCTGAAGGATGGTGTTTAGCTACATTGAGGATTTCCTTAGATGTTTTTCCAGTGGGAGAAATAGACAGAAGCAGAATGAAAtctgtggtaaaaaaaacaaaaaaaaaaagttatggaatAGTAATCAGAAGTGCCgtcatcctttttcttttcttttttttaaccacttttTGATGTCCTCTGTCCTCCCATATTTATTGAATTGCTTCACATTTTCTTAACCGTTGTGTGTAGTCTACATAATATGTGGCTGTAGTTGTGTACAGACAGAACTATTGCTTGCAGAAAGCGGGACACCTCTGCTGCTGTGGTTTGAGTGTTGAGTTATAATTGGTCCGGGCTCATGGCTGTGCTTTTGATGAATgctccttttcttttcctctaaaTGAAGCCGACCTGGGTCAAAGCACCATTCGGAGTACTTTGCTACAGTGGGTTCAGCTTGTCTGACGCAACAAAACTTAATGAAGTGCCAATAAGTGCAACCCTTCCACGCTTAAAGTCATTGATTGGATTACAAATGGTTTTTGTCTGGAACAAGTTGCTTCAACCAGCAATCCCCTCGGGCCTCTTTTCAATATACATAAGGTCACATCTATTTGCTGGAATAGAATTGGACTTTAATTGCAACATGCTGTAGGCTTACAACTAATATTCCTAGTATTGTCAGTATGTGATGGCTGCTCCTCAGAAGGAGACTCGGGCTGCATGTGCAGGCTTTAGGTTTTGTCTGCAGGAAGGCCATCAGGGTTTGCTTGAAGATGAGAAAAGATGTTGCTGTGTTGCTAGAGCTGTTTGCACTTTTCGTCTGATACTTCATCCCAAGTTtaaggtttatttattttaaaaccatCATGTAGTGAGTATTAATCAAGGATCCCTGACCATGTGATCAGATCTCGTCGACCATCTCATGCGTGtgattccaaaaaaaaaaaaaaagcgtctGTCTGCTCCACTGTGAGACACATTGGGTGTGGGCTTGTTTCCTTCTCTCATCATCCCTTTTGTTATGGTTTGATCAGTACAGAATCTGGTGTTCTTTTCCTTGCTCATAAGCACAGATAAATGACATTTATACGTCAATACGGAGCCTCACTGTTGCAAGTGCATTATTCGATAAGGTTGATGATTTGAAAAGGTAGGTTGAGTCAAATCTGGTCTTCCATTTTTCTCCtccttttgacattttgacatagTTTACAGAATCAGTATACTGTTGAAACATGTTTGATAAACCACACAAAATTGATTGAGGGCACTTTGCCCGTTATACGTTATAAAGAATGTCCTTTTCAGGGACAGACTCTAAGGCgcttaaaacaaaataatgtacAGAACTCTAATACCTGTCTTCAACTAGGCAATTTGTATTTGTAAGTAACTGCGCTATACATATAACAAAAATCACATTGTTCATTTGTTAATAGGTATAGAATGTCCTATTTGAACGGATCTCCTaaacttttcttttcctttttatggTTAAAGATGAGAGGGCGGTGCCGGTTGCTTCTGTGGAACTGAGCCAGACACGTTCGCAGCTTGTTTGGGAGCTGGAGAGAGCTGAGGGTCTGGTCTTTTTGTAGTGGCATCTTTCTTCTTATAATAATGCATACGGTAGCATGGGCAGAGGCTTACAATCCATgatgtaaatgttttgtttgttgtgttttttttatatgttcatattaaaagacaataaaatttaaataatattttattaaGCCTTGAATCGCCTCCAGTTGTTACTATAGGCAAACCGACAATAAGAAGCTGTTGAGGGCAGCAGCACCTGAAGCTGATGCCACAGAGGTCCGGTTGAGGTTGAGGTTGAGATTGTTCTGTCCTGTACCAAATGCTCAGATCTGGGGACACATTTGATGCCTGTTGAGGATAAAACTGTAAAATTTCAAATGATCGTATTCTAACAGCTGTTTATTGATGTGTGGAATTAATTAAAATCAGTTCTTAAAAACA

Function

GO:

id name namespace
GO:0060339 negative regulation of type I interferon-mediated signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0032480 negative regulation of type I interferon production biological_process
GO:0005634 nucleus cellular_component
GO:0019789 SUMO transferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16065 PIAS4; E3 SUMO-protein ligase PIAS4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132754 lncRNA upstream 50207 26191868 ~ 26194089 (+) True G98384
TU132719 lncRNA upstream 107666 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA upstream 107666 26135277 ~ 26136630 (+) False G98363
TU132705 lncRNA upstream 204449 26034761 ~ 26039847 (+) False oaz1a
TU132643 lncRNA upstream 319246 25884516 ~ 25925050 (+) True G98312
TU132804 lncRNA downstream 34653 26292100 ~ 26292440 (+) False zbtb7a
TU132802 lncRNA downstream 37092 26294539 ~ 26294993 (+) False zbtb7a
TU132812 lncRNA downstream 82124 26339571 ~ 26342204 (+) False LOC120565098
TU132817 lncRNA downstream 82124 26339571 ~ 26342293 (+) False LOC120565098
TU132823 lncRNA downstream 82124 26339571 ~ 26342204 (+) True LOC120565098
XM_039811849.1 mRNA upstream 54374 26143887 ~ 26189922 (+) True atp8b3
XM_039811850.1 mRNA upstream 54374 26174461 ~ 26189922 (+) False atp8b3
XM_039812390.1 mRNA upstream 109133 26097785 ~ 26135163 (+) True lingo3a
XM_039812389.1 mRNA upstream 109133 26098381 ~ 26135163 (+) False lingo3a
XM_039810190.1 mRNA upstream 190675 26050911 ~ 26053621 (+) True org
XM_039811876.1 mRNA downstream 857 26258304 ~ 26268496 (+) True map2k2a
XM_039810453.1 mRNA downstream 25605 26283052 ~ 26295382 (+) True zbtb7a
XM_039810471.1 mRNA downstream 49175 26306622 ~ 26339210 (+) False tcf3b
XM_039810467.1 mRNA downstream 49176 26306623 ~ 26339210 (+) True tcf3b
XM_039810470.1 mRNA downstream 49176 26306623 ~ 26339210 (+) False tcf3b
XR_005640198.1 other upstream 224925 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 512119 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 697207 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1370422 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 535240 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1770525 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1879822 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2514941 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3406186 29663633 ~ 29665090 (+) True G99297

Expression Profile