RNA id: XM_039811432.1


Basic Information

Item Value
RNA id XM_039811432.1
length 2618
RNA type mRNA
GC content 0.48
exon number 9
gene id serbp1a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28261055 ~ 28269639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGAGAAGAACGTCCTTTTCCCAGCCATCTTGTGGCTTCATCTAGCGAAGTGTTCGCACCAAGCCTCGTAGAATCGGAGGAAATCCTGCTGAAGGGGCGCCATCATGCCCGGACAAATGCAAGAAGGTTTTGGCTGTGCCATAACCAATCGGTTCGACCAGTTATTTGACGATGAGTCGGATCCATTTGAGCTGCTTAAGCAAGCTGAAGTAAAGAAGAAGGAGGCTCCTGTTCCTGGTGCCGCCAAGACTGCAGCTCAGGCTGCCAAGCAGCCGAAAAAGGAGTCCCAAAAAGACAGAAAGGTCCCACTTACTGATAAGAAGGAGGAGACCCAGGCCCCCGTCTCACTTAAGAAAGATGGTGCCGGCATGAGGAGAATGGGCCGCAAGCCCGAGGGCGAAGGCTTCAGACCCCAGGCCGGCCAGGGAGAAGGGCGCCCCACCACAGACAGGCGGCCTGTGGACAGGCGGCCCCCACGCCGCTTCGACAGGCCTGCTGGTGATGCTGGCGAGAAGCCCGAGGGAGGTGAATTCTCAGTTGAGAAATCCATTGGTGATAGGCCGATGAGAGGACGTGGTGGTGCCAGAGGCGGCCGCGGCGGTGGCAGAGGCCGTGGTGTTGGTCGCAACGATGGCTTCGACTCCAGAGGAAAGCGTGAATTTGATAGACACAGTGGCAGTGACCGATCTAGTATGAAGGGTGAGGAGAAGCGTGGTGGAAGTGGATCTCACAACTGGGGCACTGTTAAGGATgacataagcgAGCTTGACCAATCGAACGTCACTGAAGAGAACCCTGAAGGAGAGGAGCATCCACCTGCTGACTCTGAGAACAAaagggAGAATGAGGTTGAAGAAGTAAAGGAAGAAGGTCCCAAGGAGATGACTCTGGATGAATGGAAGGCCATGCAGGACAAGGAGCGGGCCAAGGTGGAGTTCAACATCCGTAAGGCCAATGAGGGAGCTGATTGGAACAAAGGATTTGTGCTGCACAAGTCCAAGGCAGAAGATAAGAAAGAGGAGTTGATTGATCCTGAGATTGAGGAGTCAAAGATCGAGGATGAGCATCACTTCCGGAAGCCAGCCAATGACATTACGTCCCAACTGGAGATCAATTTCGGAGACCTGGGCCGTCCAGGTCGTGGACGCGGGGGACCACGTGGTGGCCGGGGCGGTCGTGGCCGCGGCAGCGGCAGCGCACCCAGCGCTGTCCCTGGCGAAGTCACTAGGCCAGTCCGCGGAGGAAGGACTGACAAGTCATCTGCGTCTGTGCCCAACGTGGATGACCCAGAGGCCTTCCCAGCCCTGGCTTAAGCCCAGGCTGCTGTCTCTCAGGCCTACAGGAGCCCCCTGAGCACCTCCACTACGAGGCTTGCATGTTCCTGGATCCTTCAGCAAAGTCAAATGATGGAGAAGACTGTCATTAACTATGACACTCAAAGTGAGGACTGAGTTTTacccaataaaaacaaaacgaagatggaaaaaaacagaaattaacaaaaaaagaaaagaaaaaaaaaaagaaaaggacttCTTGCTACTCTGGAGCAACTTATTGGTAGAGGTTTTGTACTTGGAAACAAAGTAGCAGGGATGTTTTCATACAGTATTTTTTTCAGAGGTTATGCATTGTCCattgatacatttttgtaattgctgcttggaaatatgcatttcaaaatgtaagcATAAGAAGGGTGTCTTTAGCTTGGTGTGAGCCATTGCTTGCTCACTTTAAGATAGCCACTGTTGAGCTCCAACCCAGGCTCATAAGCTCTGCCGCATCAGGTATTTCTGATGAGGTTACAGCATTGCTCATTAAGATTTAtggattattattttctttagcACTGgtatattgttttatattttatacaggAGGTCTATTCTTCTATGATCTTTGGCCTGTAAATCTtaactattttcataaattcTTTCAGAGACTATTTCACATGGTGCAAATAGGACATGCTTTGACCTTGGCTCAAGCGTTTCCTACATTTGAATACATTGATGGAACGGCGCCTAAATCTGTattaaggttgtttttttactaaaaTGTTCTTCTGAAGAAAGAACATTGGTGATTACTCTCCTAAATTTTCATTTATCCTGAGATTTGTCAAGTGGATTAATTTAAAGCAGAAAGTTATTCCATTTGTTCTGTATTTGGGGTGCTATTCACAGTCTAATATCTCGTCCACGCTGCCCATTTCATCTTTGATTACCAGCCATGTGCAAGTCAATTAATgcctttgtttttactttcaagAGTGATACAGAGAGGAAGTGTCTTTACACAGCTGAGATATGGCTGTAGTCTTCTGGAAGCCCTCAGACCGTCTCCCGACTGTTTACACACTCCACTCGAGCATCCTTCCAAGATGTAAACTCAGCCCagcttcagtttgtttttgcagtCTGTTCTGTGCTGATATTTTCCTCCCACTGTTGACTTGCGCTGTAGCTTCCACAGTGGTACCACTGCATAATTGCTCTGAAAGAAATACAGTCGTTCATTGTGTGGATCAACCAAAGTGCTCTACAAATGTGTGAATTCTAGCCCTGCTATTAGAGACCTCTGTCGGTAAATAAAGATGGTCGATAAATCTTT

Function

GO: NA

KEGG:

id description
K13199 SERBP1; plasminogen activator inhibitor 1 RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 378745 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 401933 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 412118 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 428234 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 600995 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 42955 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 179904 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 187354 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 187354 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 300009 28569648 ~ 28570858 (+) True G99007
XM_039810266.1 mRNA upstream 3452 28253295 ~ 28257604 (+) True hsd17b7
XM_039810267.1 mRNA upstream 3452 28253295 ~ 28257604 (+) False hsd17b7
XM_039810324.1 mRNA upstream 7926 28218202 ~ 28253130 (+) True ddr2a
XM_039810326.1 mRNA upstream 7926 28220781 ~ 28253130 (+) False ddr2a
XM_039810328.1 mRNA upstream 42975 28205897 ~ 28218081 (+) False uap1
XM_039810542.1 mRNA downstream 76776 28346415 ~ 28353756 (+) True LOC120565127
XM_039810541.1 mRNA downstream 103944 28373583 ~ 28379031 (+) True LOC120565126
XM_039810195.1 mRNA downstream 252134 28521773 ~ 28523624 (+) True LOC120564926
XM_039810196.1 mRNA downstream 282991 28552630 ~ 28565249 (+) True LOC120564927
XM_039810543.1 mRNA downstream 307953 28577592 ~ 28585350 (+) True si:dkey-183n20.15
XR_005640167.1 other upstream 114731 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 176669 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1465317 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2241685 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2528879 25730258 ~ 25732177 (+) False slc35a3a
TU133723 other downstream 502749 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1393994 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2157864 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2540879 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3353059 31622698 ~ 31625796 (+) True G99791

Expression Profile