RNA id: XM_039811453.1


Basic Information

Item Value
RNA id XM_039811453.1
length 1071
RNA type mRNA
GC content 0.62
exon number 4
gene id LOC120565564
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1537999 ~ 1574777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgggtcgtggctgggtcttccagCATGACAGCAACCCGAAACCCACTGCCCGGGCAACTAAGGAGTGGCTCAACCCCCGGAGAACTCCGCCAGACCCCCGCCAGACCCCCCAGACCCCCACCCCCGCAGACCCCGCGAGGCCCAGGACCCCCGCCCAGACCCCCCCCGAACTCCGCCAGACCTCCCGCAGCCCCGACCTCCGCCAGACCTCCCCGGCCCGAACCCCAGACCTCCGCCAGACCTCCGCCAGACCCCCGCCAGACCTCCGCCAGACCCCCGCCAGACCCCCGCCAGACCTCCGCCAGACCCCCGCCAGAACCCGGATGTTCCAGCTCCGAGACATGCTGCACCGCGACCCATGCAACAGtgaTCTGgatcgatgcatcacgatgaaacagaaacagaaaagtcCTGAGATCCTCCGTGACGGTTCTCGTCCCCGATTGGTCCGCCGGGTCTCCACCAACAGTCGGGAGCGTTGGCGGCAGCAGAACGTTAACGGAGCGTTCACCGAGCTGCGGAGTCTCATTCCCACGCACCCCCCCGACAGGAAGCTCAGCAAGAACGAGATCCTGCGTCTCGCTCTCCGGTACATCAGCTTCCTGGACCAGGTGCTGACGGACCAGGTGCTGACGAGCAGGTGCTGACGGACCAGGACCGGGCGGCGCCCCGGTGCCGAGCGGGTAGCGTGGACCAGGAAGACGCGTCACAGGGAACGATGTCGCCAAACTCTAGCTGTGAGAGTTCAGCGGACGGAGACTCGGACTGTGGAGGGCTTCTGCAGTTCCTCCACCTGGCGAGCAGCTACAGCTGATCAGACGGATCCAGCAGAGACCGGCAGGACGGGTCCGCCATATTGGCTCTGACAGGGGGCACATCACAGAAACTTCCCCGTCTTTTCCCAATTTGGTATTACAGAAGCTTTACTTCATCCTGTCTTATCGCAGGGTAGAAAATCCTAAAAACCGACATTGGTCTGGCTGGAAGGGATGCAGATCCTCGCACAATCTAGGgtcatataataatataatgttaATACTTTCactagggctgccacctcttagtctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640237.1 lncRNA upstream 42632 1494808 ~ 1495367 (+) True LOC120565414
TU123955 lncRNA upstream 61220 1458163 ~ 1476779 (+) True G92080
XR_005640234.1 lncRNA upstream 70182 1463719 ~ 1467817 (+) True LOC120565410
XR_005640235.1 lncRNA upstream 101385 1433658 ~ 1436614 (+) True LOC120565412
TU123933 lncRNA upstream 117460 1418749 ~ 1420539 (+) True G92070
TU123958 lncRNA downstream 3742 1578519 ~ 1615013 (+) True G92083
TU124110 lncRNA downstream 7385 1582162 ~ 1582542 (+) True G92195
TU124108 lncRNA downstream 7867 1582644 ~ 1583710 (+) True G92194
TU124134 lncRNA downstream 10342 1585119 ~ 1586085 (+) True G92213
TU124111 lncRNA downstream 12960 1587737 ~ 1588264 (+) True G92196
XM_039812460.1 mRNA upstream 157085 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 309320 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 512856 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 528786 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 582763 886359 ~ 955236 (+) True grin3bb
XM_039811454.1 mRNA downstream 50797 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 61186 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 292944 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 316777 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 318925 1893702 ~ 1908999 (+) False serpinc1
TU124103 other upstream 2143 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 281805 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 313191 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 313191 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 333953 1202887 ~ 1204046 (+) True G92157
TU124120 other downstream 4178 1578955 ~ 1910061 (+) True G92201
TU124157 other downstream 122197 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 292875 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 292875 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 414031 1988808 ~ 2025931 (+) True LOC120565575

Expression Profile