RNA id: XM_039811454.1


Basic Information

Item Value
RNA id XM_039811454.1
length 1437
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120565565
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1625574 ~ 1630680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGCCTCAAGAAGTCGTCTTGGGAATTTTAGAAGATTTGGGAACCGACGACTTTGAAAAATTTAAGTGGTtcctgcagcagaaagggacaCTTGAAGATTTCCCAGCAATTCCAAAGTGTAAACTGGAGAATGTAAACAGGAGGATCACAGTGGATATGATGTTCCAAACCTACAGTATAAACACTATTAATGTGACCAGAATAGTTTTAGTGAAGATCAATCAAAATGAGCTAGTGAAGACTTTATCAAACATCATCTATGAATCTGCAGgagagcttgacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacaatGCACACTGGAGATTCTCAGTCTGTCGGGTtgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatttgagagagctggacctgagctacaatcatccaggagactctGGAGTGAAGCTACTGTCAGCGGGACTGAAGGATCctctctggagactggacactctcagggtggagcctgctggactCAGATATTTGACACCAGGTCTATGGaggtattcctgtgaactcacactcgacacaaacacagtgaacagaaacctcaaactgtctgacaacaacaggaaggtgacacgtGTGAAGAaggatcagccatatcctgatcatccagagagatTTGACTTCTGGTgtcctcagctgctgtgtagagatggtctgactggtcgttgttactgggaggttgagaCAAGAGGATGGGTtgatatatcagtgagttacagaggaatcagcaggagaggagacagagatgactgtttgtttggacgtaatgatcagtcctggagtctgttCTGCTCTGATGGTGGTTACTCTGTCTGGCACAATAACATCAGaacatccatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactaaGCCTCTCTATCCTGGGTTTGGGTTCTGGTTCGGTTCTGGTGTGTTTGGGTTCTTGTTTGATTATCCTGGTGCCTCGgtgtctctgtgttctctgtaggacggagagtctcctcctgtttcctactgctgatcagttgagtctgtacaggatcacacttacagaaatatGTCAGGTAATTGTTATaaactaatgaatgaactttgtatAAAATAATTCAGAATTATTGACCAGATTCCTCGTGAACATTATAAACTTCTTCCACTTCCAgtcctttaaagatggaagctgtgatcatCAAATTGTAGAAATGCCGTTGACTTCTGTCATGTTTTGTCTTAAattctgtctcttttcacaataaaagcataaagttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124143 lncRNA upstream 2180 1621108 ~ 1623394 (+) True G92221
TU123958 lncRNA upstream 10561 1578519 ~ 1615013 (+) True G92083
TU123963 lncRNA upstream 21271 1569368 ~ 1604303 (+) True G92088
TU124111 lncRNA upstream 37310 1587737 ~ 1588264 (+) True G92196
TU124134 lncRNA upstream 39489 1585119 ~ 1586085 (+) True G92213
TU124150 lncRNA downstream 29118 1659798 ~ 1660366 (+) True G92228
XR_005640239.1 lncRNA downstream 68740 1699420 ~ 1700502 (+) True LOC120565416
TU124172 lncRNA downstream 102886 1733566 ~ 1752952 (+) True G92247
TU124174 lncRNA downstream 113095 1743775 ~ 1777830 (+) True G92248
TU124185 lncRNA downstream 173789 1804469 ~ 1830857 (+) True G92257
XM_039811453.1 mRNA upstream 50797 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 244660 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 396895 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 600431 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 616361 983651 ~ 1009213 (+) True med16
XM_039811455.1 mRNA downstream 5283 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 237041 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 260874 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 263022 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 350158 1980838 ~ 1993868 (+) True LOC120565574
TU124103 other upstream 89718 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 369380 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 400766 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 400766 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 421528 1202887 ~ 1204046 (+) True G92157
TU124157 other downstream 66294 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 236972 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 236972 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 358128 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 441502 2072182 ~ 2076104 (+) True G92293

Expression Profile