RNA id: XM_039811455.1


Basic Information

Item Value
RNA id XM_039811455.1
length 526
RNA type mRNA
GC content 0.67
exon number 3
gene id sid1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1635963 ~ 1637498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGACGCTCGGTTGGTTTTaggaacaacagcagcagcagttagagttaAAGATGGAGTCTGAGCTGGTCGCTCTGATCCTCCTCTCCCTCAGCGGTGTCTGGTGCTGGCCGGCGACCGTTGCCACACCGACTGTTGCCATGCCGACCGTGGCCCCCCCGGAGCCGACCGTTGCCACACCGACTGTTACCACGCCGACCATGGCCCCCCCGGCCCCCGGCGTCCTGGTGAGAGTCGGGGAAAACGCCACGCTGcgctgccccctgctggacgCCGCTGAAGCCCCGCCCCAAGAAGCAGCGAAGTGGACCGTCAGCTGGTACAGGAAGTGGGCTGGACGGCCCCCCCAGCTGCTGCTGAGCTTCCGCCTCACCGCGGCGTCCAACGTGACGTACGGCGCCGGCCTCGGCCCGGAGAAAGTCTCGGCCGCGGCCGACAGCTCGCTGCTGCTGACCGACTCCACGCACGGCGACTCAGCATTTTATTACTGCAGCATGActcagggggagggggggggtaagCAGTGA

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124143 lncRNA upstream 12569 1621108 ~ 1623394 (+) True G92221
TU123958 lncRNA upstream 20950 1578519 ~ 1615013 (+) True G92083
TU123963 lncRNA upstream 31660 1569368 ~ 1604303 (+) True G92088
TU124111 lncRNA upstream 47699 1587737 ~ 1588264 (+) True G92196
TU124134 lncRNA upstream 49878 1585119 ~ 1586085 (+) True G92213
TU124150 lncRNA downstream 22300 1659798 ~ 1660366 (+) True G92228
XR_005640239.1 lncRNA downstream 61922 1699420 ~ 1700502 (+) True LOC120565416
TU124172 lncRNA downstream 96068 1733566 ~ 1752952 (+) True G92247
TU124174 lncRNA downstream 106277 1743775 ~ 1777830 (+) True G92248
TU124185 lncRNA downstream 166971 1804469 ~ 1830857 (+) True G92257
XM_039811454.1 mRNA upstream 5283 1625574 ~ 1630680 (+) True LOC120565565
XM_039811453.1 mRNA upstream 61186 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 255049 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 407284 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 610820 1010747 ~ 1025143 (+) True plppr3b
XM_039811456.1 mRNA downstream 230223 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 254056 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 256204 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 343340 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 357321 1994819 ~ 2024965 (+) False LOC120565575
TU124103 other upstream 100107 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 379769 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 411155 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 411155 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 431917 1202887 ~ 1204046 (+) True G92157
TU124157 other downstream 59476 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 230154 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 230154 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 351310 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 434684 2072182 ~ 2076104 (+) True G92293

Expression Profile