RNA id: XM_039811470.1


Basic Information

Item Value
RNA id XM_039811470.1
length 2557
RNA type mRNA
GC content 0.58
exon number 21
gene id dab1a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37156476 ~ 37488138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actgaggtctaGCGACGGGTCTGGTAATGTAAAAGCCTACTTGGAAAACCTAGCCACAGTTTACTGCCGGGGGAAACCAGCATAACATCAGAGGAAACCTTAGTGACAGCCACTACATGCTGTAAGCTTGATGAAAGCAATGCCTCCTGGTTACTGAAACATGACAAATCAGAGGGAGAGTGGAAGAAAAGCCATTTATCAAAAAGTTGAAGTTAATTCTGTTTTTCTGCAGTGTCACGCGTAGGTCAGTTCTTGAGGCCCAAATATATGTGGAAGCAACAATGCACGTTTGCCGCTGACGAACATTGCAAGCATGATGCAAAAGGTGCACTTTCCGTCTTTGAGGAGCAGTGATATGGACACCAGGTGTGGTGACGTCCAGctctctgtgggtgtgtgtgggatgTTGTGTCAGGGCTAAAGCCCGTCCCTCTCCCATGAGCCTgtgtgcccacacacacacctggcgcCTCCGCACACACCCGGCGCCCACACACGCACGGCACTGACGCTGTGAACCGGACCCTCGGAGCCCAGCGGAGCCAAGCGGAGCGGACTGTAGCCCAGTTGGAGCCTGAGGATGTCAACAGAGACGGAGCTACAGCCAGCGGTCAGGCCCGGCAGCGTCAGACGGGACTTCAAGAGGAAAGggCAGGATCGCAGCGAGGCGGCTCTCATCAGGCGTTTTAAGGGCGATGGTGTCCGCTACAAGGCCAAGCTTATCGGCCTGGACGAGGTCACCGCCGCCCGTGGAGACAAACTGTGCCAGGACTCGATGATGAAGCTCAAGGGTATAGCAGCGGCAGCACGGTCTAAAGGAGAACACAAACAGAAGGTGTTTCTGACCGTTTCCTTTGGAGGGATCAAGATCTTTGATGAGAAGTCAGGGGTCCTCCAACACCACCATGCGGTCCACGAGATCTCCTACATCGCCAAGGACATCACGGACCACCGAGCCTTCGGCTACGTCTGCGGGAAGGAAGGGAACCACCGCTTCGTGGCAGTCAAGACCGCGCAGTCGGCTGAGCCTGTGATCCTGGACCTGCGGGACTTGTTCCAGCTCATCTATGAGATAAAGCAGCGGGAGGAGATGGAGAAGAAGGCCCAAAAAGACAAGCAGTGTGAGCAGGCGGTCTACCAGACAATACTGGAGGAGGATCTGGAGGACCCGGTCTACCAGTACATTGTGTTTGAGGCGGGACACGAGCCCATCCGTGACCAATCGGAAGAGGGCATTTATCAGGTTCCCACCAGTCAGCAGAAGGAAGGGGTCTATGACGTCCCAAAGCGACACCCAAAGAACGGACATCAAAACACgcccctccaccaccaccatccccatcatcaacatcatcatagTCATGATCGGCCCCTCCAACAAGAACAAGCTGCGCTGCAGCAGCAGGCAGTGGCAGATCTCATAGACTTAGACCTGGAAATGGTGACTCAGAATATCAACCAATTAGAGATTTTTGGAGACATGTCCACACCGCCTGACATCACCTCTCCATCGACCCCCGCCTCTCCAGCCAACACCCTCGACCCCTCGCAGGGCCTGCTGCCTCCCACGGAACTGTTTGCTCCCTTCAATCCTGCGTCTGTGCCCTCAGGTTATGTGACGATGGGAGCAGTACCCCCCGGCCACTGGTCCCAGCAGGCGTTTGCTGCCCAGACACCGCTGGCCTTCGGGGTCCAGTCTCCTCTAGGTCCGGTAGCCCAGGTGCTGCCAGGCGGCCAGCCTCTAATCTGGGGCCAGGCCAACATCTTCCCAGccacccagcagcagtgggcagccatggCGGCCGGAGCCTTCTCCCCCACAGCCTACCTCCCTGCCCAACCTGTGGGCACTCTGCCTGCCGCCATGTTCCAGACTCTCACCCCCGTCACGACTGTGACTCCAGCTGGCGAGAGCCATTCAGGTGCCGGAGCCAGCGCTGCAGCTCCCTCCCCTTCAGCGTCGTCGAGTCCGCAGCACGGGGAGAGGGCAAGGAAGATGGGCAAGGAGATGTTCAAGGATTTTCAGCTGTCGAAGCCTCCGGCAATGCCGTTGAAGAAGGGTGAACAGCCCGGCTTAGCAGGAACCTCCGAGGCATTCAGCACTTACTTCAGCCGTGTGGGCACAGCCCAGGACACGGACGACTGTGACGACTTTGACATTTCTCAAATGAATCTGACGCCAGTCACCTCTACGACACCATCCACCAACTCACCACCCACCCCAGCACCCAGGCAGAGCTCTCCCTCCAAGTCCTCCGCCTCCCATGTCAGTGACCCCCCCACCGACGCCACAGACCCCCCCACAGATGACTCGTTTGGGGAAGCGGAGGGCAGCCCTAGTCGCAGTGGAGAGGAAGAtgctGCGTGTGGTTCTGGGTCGCCCTGCCCCAGTGAGACAGCAGAGCCCAGCCCAGACCAGGCCAGTCCAGAGGCTGGGAGCTAGATAGCAGCAGGGCAGGAAGGGGAAGAAGGACCCTCTCTATGCCCAGATCAACAAAGGGAAGAAataaagagacacacaggaagACAGACCTGACCAGCACTGAGAGAACAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135764 lncRNA upstream 53587 37100787 ~ 37102889 (+) True G100749
TU135762 lncRNA upstream 109358 37046901 ~ 37047118 (+) True G100747
TU135750 lncRNA upstream 112910 37039248 ~ 37043566 (+) True G100738
TU135718 lncRNA upstream 178314 36968687 ~ 36978162 (+) True G100726
TU135711 lncRNA upstream 198146 36937165 ~ 36958330 (+) False prrc2c
XR_005640318.1 lncRNA downstream 81011 37569084 ~ 37574819 (+) False LOC120566005
XR_005640317.1 lncRNA downstream 82479 37570552 ~ 37574819 (+) True LOC120566005
XR_005640319.1 lncRNA downstream 82483 37570556 ~ 37574819 (+) False LOC120566005
TU135946 lncRNA downstream 170768 37658841 ~ 37659093 (+) True G100906
TU135960 lncRNA downstream 262788 37750861 ~ 37752138 (+) True G100917
XM_039811820.1 mRNA upstream 14884 37127785 ~ 37141592 (+) True oma1
XM_039812393.1 mRNA upstream 42252 37108573 ~ 37114224 (+) True mysm1
XM_039810338.1 mRNA upstream 49384 37047277 ~ 37107092 (+) True suco
XM_039812140.1 mRNA downstream 3588 37491661 ~ 37512914 (+) True LOC120565974
XM_039812191.1 mRNA downstream 44430 37532503 ~ 37563747 (+) False plpp3
XM_039812190.1 mRNA downstream 44895 37532968 ~ 37565901 (+) True plpp3
XM_039810889.1 mRNA downstream 210981 37699054 ~ 37750195 (+) True usp24
XM_039810892.1 mRNA downstream 210981 37699054 ~ 37750195 (+) False usp24
XR_005640357.1 other upstream 24171 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 457607 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 621937 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 621937 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 681281 36473538 ~ 36475195 (+) True G100568
TU136417 other downstream 1389138 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1972373 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2073049 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 3027020 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3737018 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile