RNA id: XM_039811498.1


Basic Information

Item Value
RNA id XM_039811498.1
length 4400
RNA type mRNA
GC content 0.43
exon number 17
gene id swt1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13796094 ~ 13820008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATAGGCGTAGTAGAAGAAGACAGAAGCGGAAGAGCAGCGGATGTTTTGATCTGTCggcttatatactgtctatgcttaCAgaaaatgtcaaaaaagtcaaaaaagagAAAGCGCAAGAAGTTGTCATCCTCAAGTGAAGAAGATGAGAAGGCATCCAAGAAACGAGATGTTACCAAGAAGTGCAAACATGGCAAGAGAAAGCAAGATGTAAAAAGTCAGGCGAGCTGTGCAGCAAAACTGGAAAATTGTGCTTTTTCTACCGTTAAAGATGTTTCCCAAAGCACCCGCCAGATCAAAAAGCCTGTCTACAGACTGGCAAAAACACAAGCAACAGACCAGAAAGCTGTTAATAAGGAAGAAGAATGTACAAAATCAAAAAGTGTCTTAGTGCCATCCCATTGGGGAAAATGCTCTAGTAAAGCAAAAAACGATATTTCAGGGAACGAAAATACTGTCAGTGGgaataagactgtgaaaatggGACACTTAAAATCCTCGAACAATGCAGGTACAGTTCCTCAGAGGACAGACAAGACATCTAATGAAAGATCAGATGAAAAGTCTTCCCAAAGGACCCCAtccaaaagaaaaaagcagCTAATGAGTCCCAGTTTGGTTTCTGCTGAACAGAAAGAACAGAGGCAGGATGTCCTGGAGAGGGAGCGCAGAGCTGAGGAACTATCAAGGTCTGGAAATGACAGCAACACCATCAAGACCAGGGAACCAGTCAAGACCTCCTCCGCTTCCAAGGATACTTCGCGGCAAAAGAGAACCGAACTGTTCGAGAAGATGTGCCAAAGGcatcaaaaaaataaagctaAAAGGAGTCTGTGTACAGAAGCCAaaacttcctcttcctctaccacAAAGCATTCCTCCACTTCAGCCAAGCAGACTACCTCAGTGAGTAGCTCAGATGTGGTGAAGAATGTCACTTCAATCCCAGGTAATGCCACATCAGTGTCACATAAGACAGCTAAGTCATCATCTGCTCAGCAACAAAAATGCTCTATCGCATCACCTCTGCCTCCTAATTTTAAGATACCAAAACTGGTTCAACCAAGGTCATTAGGTAGCACCGGTAGGGATAATGATGCTAGTTCTACAAACCGAAATCTCAAACATGGGACTGAGATTTCAGTCTCTGGGGCCTCAAGGAGCAACTCCAAGCAGGAAACTGTCCATCAAGCTCACAGCTGTTTGGATGTTACACCTAGTTGTTCATCTGAAGGACAAGATAAGAGGTCCTCTTTGTCAGATCGACTCCCAGCTACGTCTCATACCGTCACTGAGCCGTGGTATGACCAGatGCAAGTGGTTGAAGAGCTACATCTTGCCCGTTCTGAGAAGAGATTGGAGGTGAATGTAATGCAAAGCTATGGAGAATTAACCTGTATGGACATAGACCTTCCAGAAGAGGGAGCTGCAGACACGTGTAAACAACCTCCTCAGCAAGACCTTATCCTTGTTTTGGACACCAACATTCTCCTCAGTCACCTGGATTATGTGAAAAAGATCATATATCACGGCCTTGGAGCCCTGGGCTTCCCTATTGTCCTGATCCCCTGGGTGGTGCTTCAGGAGCTGGATTCCCTAAAAAGGGGGAAAGGCCTGTCAGGTTCTGTGGCCCACCTGGCAACTCCCGCCATCTCGTACATTTACAACTCTTTGAAGAATCGGGAACCTCACCTCTGGGGGCAGTCTATGCAGCAGGCCGCTGAGAGCAGCAATGGTCTGAATGCTGAGAATAATGATGACAGGGTGCTGCAGTGCTGCCTGCAATACCAGAGTCTCTACCCAGAGTGTGCTCACATTCTATGCACTAATGATAAGAACCTATGCAGTAAGGCCCTCCTGAGTGGGGTGAAGGCCCTCAGCAAGAGTGATTTAGAGGCAGAGGTTGGAAGATCCAGACATGGCTTTCATCCTGTGCAAAACAATAAGACTCCCATGCTGCCTCACATCAGCCCTCCTGTCTCATCACCAATGCCGAGCAGGAGCTGTACACCAGTCCAGCCACACTGTCAAGAGACAACAGGCATTTCTGTAGAAGAGGAAGATGACAAGCGGCTGACCAAAAGAGAGGATGAAGAGAAGACAAAATGGGACTGTAGCTGTGTTTCTGAACTAGAAGACTGCCTGCGAGAGGTGCTGTCTGATGTGTTAGAGGTAGAGATGAAGGCGGCTTACCAAGAGCTTTGGCTAGAGATAGTTTACCTGAAACCACCATGGACTCTTCAAGATGtcctgcattgtttaaaaaaacactggattgcTGTTTTTGGGCACATTGTCCCACGGAGGAAGCAGCAAACAGTTTTAAACCTCATTGACTTCTTCAACTCAGGTGAAACTGCGGACTGTAGCGCTACCTCAGCGGCCCTCCAAGAAGCTAAGGAACTTGTGAAAGCGTTTGGAAAAAGTTCAAGCCGTGTTCCCAGTGCCATCTCCATAATGGACAACATTTACAATAAGCTACAACCGCAGtgggaATCTCCTGCCTGTGATGTTGTcatgaatgatgatgatgaagacaaACAACCCACATCTGCTCAGGTTTCTCACCAGGAAGTATGGGCCCTGTTTGAGAACATCTGGTCTAATGTGTTCCAATTAAGCTTAGAAGTGTTCAAAGCTCTGGGCTTTGACCCTCACACCATGCAGAGGGCTCAGTCAGTGGGAGGCCCTCCACCACCACAGGACGCCTTGGTCTATTTGCACAAACTGTCCTCCATGGTCTCACAGCTGCTCCAAGCTTTCAGCAGTGTCTTGTCCTCAGCTCCTGGTTTAGAGGAAGTCCAGACACTGCTCGGCATCATCCACGCTAATAAGATTGTTGATGTGGATTCCAGATTGACAGCCAAAGAACTTCTAGATTGTTTCTCACAACAAGACTACagGGAGAAGCTGCGAGTTGGAGGGAACCAGTTAATGGGGCTGAAAGAGGCCCTGGATCGTTGTGTCGGGACCTCAGGTCAACAAATCCCCTTTACCACATCGCTGCCCTGATTGGATCCGAATCAGGGAGTCTGCACATCAGCCAAACAGATGCGCTGAATAAACAATATCCTTTACTTGAAGTAAAACACTTGAATTTGAAGCACGTCTGCTGCTCATAGTGTGCCTCTGGTGACTGGAACTGTTTACCCTTTTTTAATTTCCATGTATGGATGTTCTCCGTCATTGTCATTACATTTGCTAAACAGAGCTTGTACAGTATTTTCTGTAtctgacattttacattatTAAGAGTTTAGAGTTCCTCCAATATTCATTCAGCTACATTACACCTGGTTGTCATATCTCCTGCCAAATCACAGTTGAGCAGCGATTTCTCACCTTTCACCCTTCACAGGGCATTTTATATatcattttatatttcagtttagTAAGTGTAACATTTATGCACAGAAcatattgtattattttgttacCGGTAGTTAAATCACAGCGCTGgctttcattattattattattattattattattattatttaaacatttaaatttgtttttgaaACACAGTTTGTTACATAGTGTGCAAACATAGAATTTTGAGATATTTATTTAGTGATAGTTTTAGACGATATGAATGTGTGGTGATGCAACAATGTCTGAAGTTTTAGGTTTACCCCTCAGGCCACTGTGACAACTGACAGACAGCTTTCTTTTAATGACAATAGTTAACTATATTTTAATGTCTCTTCATTATTTTTCATCCCCGACCCTATTTAGCAGTTGGTTCCCATTATTTATGATTGTTCAACTCCACCGAAAGCTTCAGTTCACTGGGCTTAAAGAAATAGTACGTCATTTTTGGTAAATAgcgcttattcgctttcttgttCAGAGTATTTgtgctacgctaagctaaccatcttcATATTTTTCATGTTCGTTTTACCAAATTAATGCTTTAGACTTTACACAACTGACTGCAAATATAGCTAAGAGCATAAAAACCAAAGCAATAACACCTGACCGAGAGTAAGGTTTGACTTGCCTGGCTATCTTTTGAGCTTCTTCTTTTCGAAATCATGATTTTTGAAAGCCGACAGATTGTCTCACGGTCCCAGTGAGAAGCTGAAACCAAatggctatttatttatttttactaaagcTATTGGTGGAGTTGTCACGCATAATCATAAATGATAAAGAACAAAACTTTAATAGAGTCTAGTTGGAAAACCAGTGAGTGCTCAGATTTTGCTGgttttggttgattttttttaagtagaaatgtaaataatttgagaacacaaaatatattttatgtaaCATACTTGAATGTTTACAACAAGACATTAAATGTTTTGAAGCTCTGTCTTATgagagatttctttttcttgCTTCCACTGATCTTTGAGTAGTTAAGTCAGGACCACACAAGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640289.1 lncRNA upstream 49022 13704367 ~ 13747072 (+) True LOC120565805
TU128338 lncRNA upstream 282029 13510193 ~ 13514065 (+) True G95148
TU128315 lncRNA upstream 308728 13487036 ~ 13487366 (+) True G95139
TU128289 lncRNA upstream 395162 13399830 ~ 13400932 (+) True G95114
TU128288 lncRNA upstream 396477 13390823 ~ 13399617 (+) False LOC120564965
TU128368 lncRNA downstream 2845 13822853 ~ 13825269 (+) True G95173
TU128371 lncRNA downstream 2845 13822853 ~ 13824088 (+) False G95173
TU128376 lncRNA downstream 5449 13825457 ~ 13828481 (+) True G95177
TU128378 lncRNA downstream 10842 13830850 ~ 13835258 (+) True G95179
TU128472 lncRNA downstream 133141 13953149 ~ 13954884 (+) True G95236
XM_039810412.1 mRNA upstream 380095 13413361 ~ 13415999 (+) True insl5a
XM_039810238.1 mRNA upstream 396350 13390829 ~ 13399744 (+) True LOC120564965
XM_039810237.1 mRNA upstream 413347 13379398 ~ 13382747 (+) False LOC120564964
XM_039812047.1 mRNA upstream 427087 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 436969 13356372 ~ 13359125 (+) True LOC120565910
XM_039811693.1 mRNA downstream 37026 13857034 ~ 13947979 (+) True hmcn1
XM_039811906.1 mRNA downstream 175487 13995495 ~ 13999954 (+) True ptgs2b
XM_039811908.1 mRNA downstream 204747 14024755 ~ 14028859 (+) True pdcb
XM_039811907.1 mRNA downstream 204748 14024756 ~ 14028859 (+) False pdcb
XM_039810521.1 mRNA downstream 214249 14034257 ~ 14065550 (+) True tprb
XR_005640172.1 other upstream 413350 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 575722 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 695649 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2351561 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2547447 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 799350 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 990360 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 990360 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2500486 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4035629 17855637 ~ 17859152 (+) False nppc

Expression Profile