RNA id: XM_039811502.1


Basic Information

Item Value
RNA id XM_039811502.1
length 2208
RNA type mRNA
GC content 0.62
exon number 14
gene id LOC120565597
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3217726 ~ 3574149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGAGGTCAGGCTCCCGGCCTGCAGCTGGCCATGGAGGAACTGGAGGAAGGAGAAGGCGAGACGCTTGTTGTCTGTCATGCGTTACCGGGCTAATCCACAcctgaaacacagagacagctgGGTCTCTCTCCGTCACCATGACAGACAACAAGCGTCTCGCCTTCTCCATCCTCCAGTTCCTCCATGACCAGCTGCAGGCCGGGAGCCTGACCTCCGGGGCCCAGGAGAGTCTAgaagTTGCTGTCCAGTGTCTGGAGACAGCGTTTGAGATTTCGACTGATGACCAGACGCTCGCCGTGCCCATGACCTTACCGGAGATCTTCGCCACGGCCACGGCCAAGctTCCGTCTGAGTCTCAGGTCAACAACAACGCTGCTCCCCGACAGCCCCACAACTCTCTCAGCGAGGAACAGCGAGAAGAGGCCGAGGCGCTCAAAACAGACGGGAACGACCAGATGAAGGTGGAGAACTTCTCGGCTGCTGTTGAGTTTTACTCCAAGGCCATCGCCATCAACCCTCAGAACGCCGTCTACTACTGCAACAGggctgCAGCCTACAGTAAACTGGGGAACTATGCCGGCGCGGTCCAGGACTGTGAACAGGCCATCTGCATCGACCCAAACTACAGCAAAGCCTACGGGAGGATGGGTCTGGCTCTGGCCAGcctcaacaaacacacagaagcaGCCAGCTACTATAAGAAAGCTCTGGAGCTGGACCCCGACAACGACACGTACAAATCCAACCTGAAGGTCGCCGAGGAGAAGATGGAGACGACCAGCCCAACAGGAGGGATGGGTGGAGTGGATCTGGGGGGTCTGCTCAGTAACCCCGGCTTCATGAACATGgcATCGTCTCTGATGAACAATCCTCAGGTTCAGCAGCTgatGTCGGGGATGATGTCCGGTGCCTACGGTGGGATGCCTGCAGCGGCAGCGGGAGGAGGGGGAACAGGAGGCATGGGGGCAGACCTGGGAGGACTGGGGGGACTGGGGGGACTGGGGGGACTGGGAGGACTGGGGGGACTCGGAGCAACGCTGGGAGGACTCGGGGGCGGAGCTGCACCGGGGCCGACTGCTGCCGCCTCGGGGGGAGATTTATCAGGACTCATCCAGGCgGGGCAGCAGTTTGCTCAGCAGATGCAGCAGCAGAACCCCGAACTCATCGAACAGCTGAGGAGTAGATCAGCCGGGGGTGGCGCTGACCgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtctctctctcctcaggtGTCCACCGTGCTCCAGCAGCTGCAGATCACCAGCGACTACCCTCTGGCCGAGACGATGATGATGCTCGGCTTCTTCCTCACCGTGTTCGTGGAGCAGACCGTGCTCGCCTTCCGCAAGGAGCCGGCGTCCTTCATCGACCTGGAGACCTTCAACGCCGGCGGCTCGGATCCCGGCAGCGACTCCGAGTACGACACGCCCTTCATCCCTCCGGCTCGGAGCTCCCCGGGCGCTCGCAGCTCCCACGGCCACCACGGCCACAACCACGGGCACTTCAGCCCCGCAGAGCTTGTGGGGGCGGGGCCTCTTCGGCTCGCCAGCCTGGTCCTGGCGCTCTCGGCGCACTCGGTGTTCGAGGGCTTGGCGCTCGGCCTGCAGGACGACCTCGCCAAGCTGGGCGGGCTCTTCCTCGGCGTGGCCGTGCACGAGACGCTGGCCGCCGTGGCGCTCGGGGTGAGCGTGGCCAAGGCGTCTCTGGGCATGAGGGACGCGGCCAAGCTGGGCGTCACGGTCAGCCTGATGATACCGCTGGGCATCGTGGTCGGGATGGGCGTGGAGTCGGCTCGCACGCTGGCGGGCAGCGTGGCGTCCGTGGTGCTGCAGGGCCTCGCCGCCGGCACCTTCCTCTTCGTCACCTTCTTCGAGATCCTGTCCCGAGAGCTGGACGACAAGCGCGACCGGCTGCTCAAAGTGCTGTTCCTCGTGCTCGGCTACGCGGTGCTCGCCGCGCTCGTCTTCGTCAAGTGGTGATGAAGACACGTTGGGACCCTCCCCGCAATACCAAAAGTTAAACTTATGACCCCATAATCAGCAGGGCAGCAAAcagtcgacagaaaagccagtcgagatgatcggtctccccgagttggtccaaaaccTGCCTCAGAACACcgacgagacgagacgagacctaatacgtctccatagcaacaggcggcgctactctgaa

Function

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125049 lncRNA upstream 31150 3106455 ~ 3186576 (+) True G92799
TU125048 lncRNA upstream 31150 3186172 ~ 3186576 (+) False G92799
TU125034 lncRNA upstream 45544 3165682 ~ 3172182 (+) True G92786
TU125025 lncRNA upstream 54716 3131064 ~ 3163010 (+) False G92784
TU125028 lncRNA upstream 54852 3046489 ~ 3162874 (+) False G92784
XR_005640253.1 lncRNA downstream 1498 3575647 ~ 3592850 (+) False LOC120565459
TU125167 lncRNA downstream 3964 3578113 ~ 3595388 (+) False LOC120565459
TU125163 lncRNA downstream 4123 3578272 ~ 3595388 (+) False LOC120565459
TU125212 lncRNA downstream 9986 3584135 ~ 3584842 (+) False G92876
TU125213 lncRNA downstream 9986 3584135 ~ 3584842 (+) True G92876
XM_039811247.1 mRNA upstream 215187 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 358608 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 376867 2821642 ~ 2840859 (+) True LOC120565422
XM_039811224.1 mRNA upstream 623743 2586515 ~ 2593983 (+) True LOC120565421
XM_039811240.1 mRNA upstream 756129 2450531 ~ 2461597 (+) True LOC120565432
XM_039812269.1 mRNA downstream 56035 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 56035 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 56035 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 140770 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 252714 3826863 ~ 3854810 (+) True LOC120565880
TU125014 other upstream 85522 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 123316 3011766 ~ 3094410 (+) True G92773
TU124992 other upstream 123316 3011766 ~ 3094410 (+) False G92773
TU124998 other upstream 202873 3010674 ~ 3014853 (+) False G92773
TU124983 other upstream 234712 2982226 ~ 2983014 (+) True G92770
TU125178 other downstream 17956 3592105 ~ 3593384 (+) False LOC120565459
TU125177 other downstream 26829 3600978 ~ 3606825 (+) True G92848
TU125669 other downstream 622675 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 710753 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 716192 4290341 ~ 4293890 (+) False LOC120565391

Expression Profile