RNA id: XM_039811510.1


Basic Information

Item Value
RNA id XM_039811510.1
length 5754
RNA type mRNA
GC content 0.48
exon number 8
gene id midn
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27120698 ~ 27147156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGAAGAGTCTGTTAAGAGGTTCTCACCTTCCCGGCTGTGCTCTCATTACCAAGAAAGACGCCGGTGTACTAGCAACACGCCGAGGCATCTTTTAGGACACAGCTGCAGCTCCTCCTTATTGGTCAGGAGGATCGCGGTCTGGTGCGTAGCCTATAACATAACGTCGCGCGCTGGACACACACGAGCCTGCCGAAGAATTCGCTGAGAAAAACCTTGTGGATATTTCAGTTGTTTGGAGATTTATCACTGTTTGGGTTTATTTTACATGCCAAAGCTGGGGGAACAGACTGGAACACAACACACTTTTGAGCGAAGCTTGAAAGTTTTCGCCACAATAATTGtttttgttttaaaggtaACCGCCTGCGTAAATGAGCGTCCATGGCATGTTTCGCTGACAACACAGCCTACTTGCGTTTCTGCCTGGCATTTACCCATCTATGTAGCATATAGGAAGACTTTTGCTGCACGTCGGAAAGGGCAACAAAGAAAAagatcaaacaaagagaaaagcGAGCCATATGTAGTGGACTTTCCTCTGGGAATATTCTCATGATATCGACTGGAGAGAAGACGGACTGGCGGGTTTTATTCTGACTCTCTGAGAGCgagtaaaagaaagaaagaaagaaagagagagagagggagataaagCTCTTTGAATGCTGCCTTTAATCTGCAAGCAGAACAAGCAGCGGTAGCCGAAGCGGCGGACCTGCTTCACCATCCTCCTCGCCCGCTTCATCCCCGGCTCTGCTCGTCTTGTCTCCCCACTTCTCTGACCACAGGTTATCGGATGGACCAGCACCCCAGCGCCCGGAGCTGCACCAGTCGCGGGGCTTCGTCCTGCGAGGCCGTCCCGACTGAGCCCTCCATGAATCTGTACATCCACTCCACCACCGGCACACGCTTCGAGCTCTCCCTGCCCCAGGAGGAGACCGTGGACGGACTGAAGAGGAGGCTGTCGCAGAGACTCAAAGTACCAAGAGAGAGACTCGCTCTGCTGCACAAAGAAACGCGACTAAGTTCAGGCAAACTCCAGGATCTAGGCATCTCTGATGGGAGCAAGTTAACACTTGTACCAACAGTTGAAGCAGGATTAATGTCTCAAGCATCAAGACCCGAACAGTCAGTAATGCAAGCCTTGGAGAGTCTAACTGAAACTCAGGTCAGTGACTTCCTGTCCGGCCGCTCCCCCCTCACCCTGGCGCTGCGTGTCGGTGATCACATGATGTTCGTCCAGCTGCAGTTGGCGGCGCAGCAGTCCGGCGGTCCCCAGCTCCAGCACAGGCACCTCATCACCCGGGGCAACGCAGAGACCCCATTGGGACAGCCCACGGGGCAGCCCCGTGTCCCCCACCCTCACCCTCACCCTCACCCGCActcccaccaccacccccaTCATCCACACAGTCACCCCAGCCCCCACTTGTCCCAGCCTCACCTGGTcccttcctccccctctcccccagGCTCCCCTTCCTTCCCCCTGCCAACCACGCACCACCAGCCGCTCCCTCCCATGTACCACCAGTCGCCCTCCTCCGCTCACTGTAGCCCCCCTACTCCTCCACCCCACTCCCCTCGCCCGTCCCACATCCCTGGAGGGCCTTTCCGCTCTCCAGCCCATCACCACCATCACAACCACCACTACCACCAGCCTTCCTCAAGCCAACCCAGCCACGACATCGGCCAGGCCAGCCCTGTAGCCCCGGTCCTCTGCCCTGAAGCTAACTGCAGCCCCAACAGCCCCAACAGCCCCAACAGCCCCAACAGCCCCAACAGCCCCAACAGTGGCAGCGGTCCCTCAACACGCTCCCGCAAACCTGGCGCCATCATCGAGAGCTTCGTCAACCACGCTCCCGGAGTCTTCTCAGGGACCTTTTCAGGCACTTTGCACCCTAACTGCCAGGACAGCACTGGGCGTCCCAGACGAGATATCGGTACCATCCTGCAGATCCTCAACGACCTCTTGAGCGCCACACGCCACTACCAGGGCATGCCCCCCTCCCTCACCCAGCTCCGCTACCAGACCCAGTGTGGTTCACCCACCTCCCCGTCCCCCTCGCCGCCTCCTTCGCCCCAGGTTGCTGGCATTGGCCTCTCTGCCAAAGCTACCTCTGTGCCCGCCAGCAGCCCTAGCAGCCCTGCGCCGACTCTTCATCCGCTGGTGCAGTGCCAGAGTCAGATCCGCATGTGCAAACCCCCTGGTGACCGTGTTCGTCAGACCGAGAACCGCGCAACGCGCTGCAAGGTGGAGCGCCTGCAGCTGTTGATGCAGCAGAAGCGTCTGCGCAGGAAGGCCAGACGGGACCAGCGCGCTCCCTATCAGTGGCTGCCCAACCGGAAGGCCGGgcgcagcaacagcaacagcagcatgTCCAGCGAGGGCTCCCTGGACCTGGACTTTGACGACTCGGTGTGGAAGCCCGACGTTAAGGCAGACTTGAAGTCTGAGTTCGTCATGGCCTGAAAGCGCCAGATCCCGCACGCTGGGGAATAGAGTCAAAGATGTGCAAAGCATCGCTCGGGATTTACTTAGAGATATATATTTGAGGGAGTGGATTGGCAGGAGGTGACCCAGAACTGTGCAAAGGTGTCTTTTGTGCAAAGAGGAAATCAAAGTTGTCCTTGTGGCTGGCATCTgtcacattaaaaacataaagcTCCCTGCAGACTTTAAATCCCATCCGGTCCTTCACAGTTGACCTTGTGGAAAAATGGCAACAATAGCAAGAGGACTTTCTTTTGATGCTTGGATTTGGACAGGCAACAGCTAGACTTAACAGTGTACAAGACTTTTAACGGTGCGGTTACAGAGGCCGTACCTGAACTTGAGCATAGCAGAATTAAATTGGTGGTGGtggcggtggtggtggtggtggtgttttcagatatttagtttttttttctaaaattctTTTTAAAGGGCACTCTGGACAGCAATGAAGAGATCCACACTGGACTTATTAACAGGACAGGAGCACCGGAGGCCTCAGTGTTTCCTATTCACAAGAATGGCACAACTGCCGAACTATGGATTATTCCAACGGGCATTCTTATCGATCTCAAAACTCACCAACCAGAGTCTAGTTTTTACCTGTTGCGGGGTAGttaaacttatatatatatattcttttcttttttttcacttttttttttgtttctttcattttgaaacatattattctattttctaaacaaaaaatatgtagcattgTTCACAAAGCATTCAGGTTTTCATATAACAGTTCAAAGTAGTTGTTGATTTGCACATTTTCTTGATTTGTAACAGCTGGTCAAAGTGTGCAAGAAGGAGGAGGTGGGGCCTGAAATGGAATAGAAAATGAATATGGAAGTATTGATATCAACCTCAGTGACATTAGGGTATCGATAGGAACGATTAACGAGTAAACAAAATGAATTAATATGAACAGAAAGTGCTTTAGAGgaaaatctttaaaatgtatatgggggggaaaaaaacaaatctattTTTTATCTCTCTTCCTATCTGCTGTTTTCAAAAAACGGCAGCCCCCCCCACTGCGGCTGCATTCAGGTTGTTAACTACCAACAAATGCGTGCATCCATTCCCAATCATTCATTAGCTCGTTCGTGAATTGTAGTCGTCTAAGCCACAACAGATGATACAGAAAGATAAATTTCATCCAGCCCACCTCATGTCTTTCACACCTGAATGGACTTGTGGAGGGTTTGTATTAGTTTGTGTACATAAATGTGACAATTGGCAAACGTTTATAAGGGTGCGCGTGTATGTTTTGACTTAAGCGTAAATTGATTTAGAAATACCCCATGTTTTCGTCCGAGTCGTTTTCTCCCAAATAACACCATCGTTTCTTAAAAATCACGAAGATCAGCTGCAGTGAATGCATGGGTCACTACTTTACATCCCAACAGGATAAAACATCCCAACAGGATAAAACATAGAAAtcctcataataataataattacgcTATTTTTTATTGGCAAAAGAGGGAGGAGTGGGATCTGTATCCAGCATCATTATCTAGTGCCTCCACCAGTACATCCGTTGACATATCAGGTTAGGCCTTTCACAGTTTTGCTGCTACACATGGGCACTtcaaatgggggggggggaaaaaataaaaataaaaaatagtgaCTTTTTCTTTGCATGCAGAAGTGTGAATTACACTGATCTTTTTTCTAttgatggaagaaaaaaataaataagaaactgGTGCTGTGGGAATGAAGGTTACCAACATGCATGAATTTGTGAAGAAAATAAACAATGCTGCTTTTGTTGGTTaggttttttgtaatttttgaaTTTCTTTCAAATGTTAGAACAACGGTGTCCTGCTAAAGTATTACGACGCAGAGCCAAAACAGATGAAGTTAAGTGTGGACTCGCGTCTTGCTCAGCACTGAACATTCCTGTTGTGTGACAATGAAGATGATGGTGGGCAAAGAGcaacagactctctctctctctctctctctctctctctctgctccccgAGCGCTGGTTTtacccctcctcccctccctccccgtGACTCTGAAGGACCCAGACAGCCCTCCTTTAGCCACCTCCCCTCCTTCCAGCCTGAACGCCAACCCAGGCTCGTGTGGACAAACTCTGGCAGGGAACTAACAGACCAGCGGATTACAGTACTGTCCGTCAAGCGTCTGGTGTGTctctttatctgtctgtctgtctgaccgaTCGACCACCCTACTACCACAATTGCACTCCCAGAGATTGCAGTGAGAGATTACCTTTTTTTGGTGAacctcatctttttttttttttttttttttttaagtggccTTACCtttcactaaaaaaaaaaaaaatgagacacTTGGGGACagactgttttttcttttttgggatTTTTGAAACTTTCTGTGTGCATCGTTGTCGGACTTGTTGTCATCAAGGCGCCATTTTTTGTCACTGAGGACACTGGGCATCTGTTGTTTAGTGCTTTTAGCTGGTGGAGTCTCTATTATGTCAAGGCTTCTGTGCCTTAAAAATGTTGCCCTTGCTGTGTCAGTGTAAGATTTAAGCTTGTTTTCGTTGGTTGATACACAGGACTGTAGTACTCGCAGCCATGAGAGTCGTAGATTTTAGGGGTGAAGCTTGTTTGAGTGAATCCGATACTATTCAAAAAGTTAGTGTTGTGCCTCAAACACTGTCTTTGTCCCATTTCTTCGTTGTGTTGCCATGCTTGTTGGTCTCCGTTGTCCGCACCTCAcgtccctttttttttcaatttttttacaCAGTCCTCCCACCAACAAGCTGCAAAAAGCTACTAATCTGTGTTAACTTATGTTAACTGAGGAAGTTTAAATCGCAGTACTTAGATGGCAAGAAACAGCCTGAATAAGAAAGGTCCTCTGAGGACTCCAGACTACACGCACTTCCTGCTTCCTCGGATACAACattattaaaggacaattcatCCCCTGCCCTTcccaaattttttatttaattttgttttgtataTGTATGAACTATACTCTGTGTGTGCCTCACTTCTGTGTGAAACTCAAAaagatgaaacaaaacaaaaaagatgaCAAAAGCATTACAGAGAGGAGGATATGTTGGTGGAATTCTGATCATTTACGTTGCCTGTTCTTTCTTGTAGCCAACTATTGAAAATAACAGGATTCAAGAATAcaatttacaatgttctagctCTAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132998 lncRNA upstream 104512 27013306 ~ 27016187 (+) True G98545
TU132993 lncRNA upstream 122254 26997687 ~ 26998445 (+) False G98544
TU132991 lncRNA upstream 126644 26992898 ~ 26994055 (+) True G98544
TU133007 lncRNA upstream 171635 26940912 ~ 26949064 (+) True G98552
TU133001 lncRNA upstream 249135 26871344 ~ 26871564 (+) True G98546
TU133104 lncRNA downstream 122682 27269838 ~ 27271406 (+) True G98626
XR_005640341.1 lncRNA downstream 161784 27308940 ~ 27309804 (+) False LOC120566143
XR_005640342.1 lncRNA downstream 161784 27308940 ~ 27309514 (+) True LOC120566143
TU133113 lncRNA downstream 164613 27311769 ~ 27312218 (+) True G98635
TU133135 lncRNA downstream 211448 27358604 ~ 27358841 (+) True G98649
XM_039811282.1 mRNA upstream 20443 27090223 ~ 27100256 (+) True atp5f1d
XM_039811361.1 mRNA upstream 184816 26878308 ~ 26935883 (+) True polrmt
XM_039810192.1 mRNA upstream 324412 26791729 ~ 26796287 (+) True micos13
XM_039811685.1 mRNA upstream 396298 26522345 ~ 26724401 (+) False celf5a
XM_039811440.1 mRNA downstream 225653 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811355.1 mRNA downstream 365999 27513155 ~ 27520341 (+) True LOC120565509
XM_039812035.1 mRNA downstream 430818 27577974 ~ 27584940 (+) True tmem161a
XM_039810829.1 mRNA downstream 458804 27605960 ~ 27611082 (+) True tmem221
XM_039810830.1 mRNA downstream 465696 27612852 ~ 27615467 (+) True rfxank
TU132947 other upstream 324960 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1101328 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1388522 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 1573610 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2246825 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 880816 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 990113 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1625232 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2516477 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 3280347 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile