RNA id: XM_039811515.1


Basic Information

Item Value
RNA id XM_039811515.1
length 1731
RNA type mRNA
GC content 0.56
exon number 12
gene id LOC120565613
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7263547 ~ 7285759 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCCTTCAAAACAAATGGACAGAGCTCCAAACCAGTTAAAATCCCCCTCCTCCGGAGCGGAGCGCAGCAGAGGGCGAGAGGGTCCAGCGCCGCTGTCCGGCTCAAACATGGCGGGCCGTGGAGGCGACGTGATGTGTTCGTGGTCCGGGTTCGGCTCTGCCACCGACCTCCCATCTGTAGCCGTGTCCGAGGAGCAGAAAccgaggaagagaaggagagctTTCTGCCTGAGCAGGATGAAGTCCCGCGGCAAACAGCAACAGCCCCAGCCCGccgcaaacaacaacaacatgccGTTCATGATGCACTGCCAGCTGGGAAAAGAGATCAAACACATCTGCCGCAACTGCCGGGGAGTGGAGCCGCTGGACGCTGAGGAAGTGGAGAGGTTGGCAGCGATGCGCTCTGATTCGCTGGTTCCGGGAACACACACGCCTCCCATTCGGCGGCGGAGCAAATTTGCCACCCTGGGACGTCTGTTCAAACCCTGGaaatggaggaagaagaagagtgaAACGTTCAAGCAGACCTCTGCGGTGTTGGAGAGGAAGATGTCCACTCGccagagcagagaggagctcATCAAGAAAGGAGTGCTGAAGGAGGTTTATGAGAAAGACGGCTCTTCCCCGGCTGTACGCGAGGATGCGAAGATGGAGAACGGGCGATCTCTGCTGCTCGCCTCCGCCATGTTGGAGTCTGAAGGCTCTCTGGAGTTCCAGATGCCAAGTGAGGGCGCGTGTCAACAGGACTACGGGCAAAAATCCACGGAGAAGTCCACTGTGTATCCGTCTGACGGCGCTGAATCAACGCTCTCCAGACCCCCCGCGCTACACAAACAACCTCCTGCGCTGCCACCCAAACCCTTCAACAGGCTACCTAATCACATCATAGACGGTGCCCCGGTGAAGTTGCCGTGTATGTTGTCGAAGTTGTCTCCTCCTCTACCTCCAAAGAAACTCATGATCTCCGTACCTGCAGGGAGCATGGAGCCCTCTTTGCTCGCCTTCCAGAAGTGCCCCCCTCCCAGCCACGCTCCAATGGGCGGGCACTCCCTGCAGTACGGGGCGCTACCCCTCCACCCCCCCAGCCGAATAATAGAGGAGCTCAACAAGACCCTGGCCCTGACCATGCAGAGGTTTGAAAGCTCCATGATGCACGCCGTTCCCACGGTGATGATCGAGTGTGACGACGACAAAGAGAACCTCCCCAACGAGGTGGACTACGAGGACCTGCctgacgaagaagaagaagaagaagaggagcaagaggaggaagaagacgaCGACGATGAGGAAGAcgaagatgaagaggaggaggatgatgatgatacatTGTTTACAaGCGTACTGGCCATGAAGGTTTTACGAAAGGACTCTCTGGCCATCAAGCTGAGTAACCGTCCATCGAAGAGGGAGCTGGAGGACAAAAACATCCTGCCGATGCAGTCGGACCAAGAGAGGTTCGAGTCTCGGCAACAAACGGCCACAAAACTGACCAGGCGATTAAGTCAACGACCGACAGCAGAGGAACTGGAACAGAGGAACATACTCAAACCTCGAAACGAtctggaggagcaggaggagaagagggagatcAAGAGACATTTGTCCAAAAAGGTAAGACAGAGTGGAGATGGACAGAGCGTCTCCACATCAGTGCAcatgcttaacccttgtgttgtcttcgcgTCAACCTTTAAAgGTTTCATCGGCCATAAGGTGGACTAG

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126682 lncRNA upstream 27828 7233146 ~ 7235719 (+) True G93906
TU126671 lncRNA upstream 106828 7156335 ~ 7156719 (+) True G93896
TU126663 lncRNA upstream 129115 7131348 ~ 7134432 (+) True G93888
TU126620 lncRNA upstream 132796 7127314 ~ 7130751 (+) True G93851
TU126619 lncRNA upstream 132989 7127314 ~ 7130558 (+) False G93851
TU126742 lncRNA downstream 33083 7318842 ~ 7321455 (+) True G93931
TU126743 lncRNA downstream 36307 7322066 ~ 7323426 (+) True G93932
TU126744 lncRNA downstream 41412 7327171 ~ 7327686 (+) True G93933
XR_005640327.1 lncRNA downstream 108614 7394373 ~ 7395278 (+) True LOC120566054
TU126801 lncRNA downstream 239231 7524990 ~ 7525343 (+) True G93985
XM_039811275.1 mRNA upstream 136275 7108149 ~ 7127272 (+) True igfbp3
XM_039811274.1 mRNA upstream 195613 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811272.1 mRNA upstream 292247 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039810252.1 mRNA upstream 540270 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA upstream 540270 6672071 ~ 6723277 (+) False ghrhrb
XM_039811822.1 mRNA downstream 68089 7353848 ~ 7379344 (+) True LOC120565797
XM_039812274.1 mRNA downstream 112379 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA downstream 112381 7398140 ~ 7413692 (+) False LOC120566053
XM_039812533.1 mRNA downstream 129682 7415441 ~ 7423820 (+) True LOC120566212
XM_039812332.1 mRNA downstream 294433 7580192 ~ 7581837 (+) True foxq1b
TU126420 other upstream 895193 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1049530 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1223428 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2550362 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2969657 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 64051 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 612913 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 951611 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 951611 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1861403 9147162 ~ 9159695 (+) True G94199

Expression Profile