RNA id: XM_039811550.1


Basic Information

Item Value
RNA id XM_039811550.1
length 1270
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120565642
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6002811 ~ 6029193 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCAAGCCTGAAGAGAGGCACTCATCCGATTTTATGAGATCAGATTCTTGTATTCTCTGTGGACATCATACGGATATATTTAGACAGAGTTGTCTTCGAGGAACAGAAAACTCCtggatctttttttatttgtttttaagtgtttaggtctctttttttttgttgctttccgAAACCCAGGACTGTTAAACTGGTTTAAATCTGCTTTAAGTTGGCTATATACGTACAGCAATATTAGCACACTAAAGGATTAAAATGGGCTGCTTCACATTCATCAAATTGATGATGGTCTTGTTCAACTTGCTTATCTTTCTGGGCGGCCTGACCCTGCTGGCCATGGGGATCTGGGTGAGCGTAGACGGGAGCTCCTTCCTCCGGCTGCTGGGGCCGTTGTCCGGTCAAGGCATGCAGTTCGTCAACGTGGGCTTTTTCTGCATTGCCATCGGGGCCGTGCTGGTCCTAATGGGGTTCCTGGGCTGCTGTGGGGCCCACAAAGAGAGCAAGTGTCTCCTGCTCACGTTCTTCTCCATCGTCCTCATCATATTCATCGCTGAAGTGGCAGCCGGAGTCGTGGCTCTGGCCTACTCTTCATTTGCTGAGGGGATCGCCAGAGCGTGGGCCACCCCAGCTTTACAGAAAGATTACGGCAGTGACCCTGTGGTCACTAAGATCTGGAACGCCACCATGACAGAGATAAAGTGCTGCGGTTTCACCAACTACACCGACTTTGTGGGATCTCAGTTTGAAAAGGAGAACGGAGGCAGCCTGCCGCCCATCTGCTGCTGGACTAACAGCCCCCCCTGCAGCCCGCAAGTGGCAAagcgcagtgctgtggagGGCTGTTTCAGACACATCCTGGAGACGGTCCAAAAGCACGCCAACATTGTGGGAGGCATCGCAGCAGGAATAGGAGTCTTAGAGATTGCTGCCATGATAGTATCCATGTACCTGTACTGCCACTTGGACGGCAAAATCAGCTGAGAATCCTTCACGACAGGAAGCACACAGACGAATCACATGTGATTCACAAGTTTATTAATCTGCATTATTTAACAATCACTTAGGatactctcttttctttctggtTCCAATGGGTTAGGGTTCTCAGAAAGACATCtagctttaataaaaaaaagtcatgttcaTGATGAGAATCCAGCGACTGTGTTTTATGTAGAGAGAAAAGTTTTATAAGCACCTGCAGAGTGTAAATATTTCAAATTTGCCAATAAAATATATCAAACAGCATTCACTGAGTGCTGACTGCA

Function

GO: NA

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126307 lncRNA upstream 37752 5964812 ~ 5965059 (+) True G93609
TU126234 lncRNA upstream 342006 5596770 ~ 5660805 (+) True G93541
TU126089 lncRNA upstream 510354 5488294 ~ 5492457 (+) True G93437
TU126101 lncRNA upstream 591453 5400131 ~ 5411358 (+) True G93441
TU126099 lncRNA upstream 595569 5353344 ~ 5407242 (+) True G93439
TU126313 lncRNA downstream 6176 6035369 ~ 6038848 (+) True G93613
TU126314 lncRNA downstream 6176 6035369 ~ 6047722 (+) False G93613
TU126316 lncRNA downstream 6176 6035369 ~ 6051520 (+) False G93613
TU126350 lncRNA downstream 185875 6215068 ~ 6215735 (+) True G93640
TU126357 lncRNA downstream 212002 6241195 ~ 6242158 (+) True G93644
XM_039812498.1 mRNA upstream 515926 5211170 ~ 5486885 (+) True mast2
XM_039812499.1 mRNA upstream 515926 5211170 ~ 5486885 (+) False mast2
XM_039812500.1 mRNA upstream 515926 5211170 ~ 5486885 (+) False mast2
XM_039812501.1 mRNA upstream 515926 5211170 ~ 5486885 (+) False mast2
XM_039812505.1 mRNA upstream 515926 5329840 ~ 5486885 (+) False mast2
XM_039811753.1 mRNA downstream 38490 6067683 ~ 6071247 (+) True LOC120565748
XM_039811499.1 mRNA downstream 233027 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 306558 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 325699 6354892 ~ 6381598 (+) True rhpn1
XM_039811997.1 mRNA downstream 598449 6627642 ~ 6641120 (+) True cyldl
TU125908 other upstream 1289626 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1705401 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1708921 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1784985 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 2395986 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 6176 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 172892 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 325704 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1320617 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1869479 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile