RNA id: XM_039811564.1


Basic Information

Item Value
RNA id XM_039811564.1
length 1475
RNA type mRNA
GC content 0.57
exon number 10
gene id wdr18
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 832241 ~ 854498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAAGTGACGTATCAGTGCTGCCCGCGGCGCGCCGGGTCTCTTCTCCGCGTGTGTGTCTTGTTGTGGTGTATGCAACATGGCGGCTCCTCTGGAGGTAATAGTTAGCAGCGACTCCGCAGCGCAGATGTGGAACAGCACCGTGTTCGACCTGCACAGCGGCTCGAGCCTGCTGTCGTACCGGGGCGGGAACAGCACGGCCCGGACCCTCACCGTGCTCCGCGGGGAGTACCTGCTGTCCGCGCAGCTCGGCAAGAACTTCATCAACGTGTGGGAGATCCAGAGGAAGGACCAGCTGCAGCAGAAGCTGCTGTGTCCAGGTGTGGTCACCTGTCTCTCTGCATCTCCTAACGGGCTCTTCCTCGCCGCCGGGGTCGCAGAGGCCCTTTACCTGTGGGAGgtGTCGACGGGGAAGCTGCTGTCCGTCCTCAGTCGTCACTATCAGGACGTCACGTGTCTGAAGTTCACAGACGACGGCAGCCATTTTGTTTCTGGAGGAAAAGATAACCTGGCTCTGGTGTGGAGTCTGGCCagtgtgatCCAGCTGGATTTAAGCCACACCCCCGAGCCGCGTCATGTCCTGTCTCGTCACTCTCTACCAATCACAGACCTGCACTGCGGCATGATGGGAGCTCAGGCCAGAGTGGCCACCTCCTCCTTAGACCAAACCGTCAAGGTTTGGGAGTTGTCTTCTGGTGAGTTGCTGCTGTCCGTCCTGTTTGACGTGGAGATCATGtctgtgacctttgacccctgcGAGTACTTCCTGTTCTGTGGAGGAAGTGACGGAAACATCTTCCAGGTGTCTCTGTGCAGTCAGAGTCTCAGTCGGGACAAATCCTTCCAGTCCGACAACGACGGGAACCAGATCTTCAAGGGACACAGGAACTTGGTGACGTGTCTGTCGGTGTCGATGGACGGGACGTTGCTTCTCTCTGGCTCTCACGATGAGACTGTTCGACTCTGGGACATCCAGAGCAAACAGAGCATCCGCTGCCTCGCACACAAAGgTGCGGTGACTAACGCCATCATCATGCCGGCTCCGGCGAACATGTTCCTGCCCGACAGCCGGCCGGCCGTCCCACTGCCGCGCTTCAGCCGCCACTTACACACCGCGGACGGCGCCGAGGCCGCGGACGTCTGCGTCCGCATCGGACTCTACACACAGgAGGAAGAGAATTCGTACCTGCAGAAAGTTGACAGGCTGAACTCTCTGATGAACGCCGTGACGGACAAGTCGGTATTTGGAGACGGCGAGAACACGAAGGTTCGAGTCGCCGAACTGGAAGAAGAAGTTCAGACTCTGAAGAAGGTCAATAAAGATCTGTACGACTTCTCCAGTCAGCTGCTCACTAAAcctacatagacacacacacagacacacacacagacacacacacacacacacacacacacacatttgaactCTGTAATAATTTTTGTtgttggaaaataaaagtcttgtTTTGGTAGGA

Function

GO: NA

KEGG:

id description
K14829 IPI3; pre-rRNA-processing protein IPI3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123876 lncRNA upstream 6195 824574 ~ 826046 (+) True G92029
TU123874 lncRNA upstream 13916 816582 ~ 818325 (+) True G92027
TU123857 lncRNA upstream 58284 722115 ~ 773957 (+) False G92018
TU123920 lncRNA downstream 5975 860473 ~ 860703 (+) True G92062
TU123926 lncRNA downstream 45723 900221 ~ 940759 (+) False G92066
TU123924 lncRNA downstream 68799 923297 ~ 984045 (+) False G92066
TU123925 lncRNA downstream 68799 923297 ~ 947713 (+) True G92066
TU123968 lncRNA downstream 110270 964768 ~ 965650 (+) True G92093
XM_039811713.1 mRNA upstream 24002 784199 ~ 808239 (+) True stx6
XM_039811714.1 mRNA upstream 44367 786702 ~ 787874 (+) True LOC120565732
XM_039811715.1 mRNA upstream 44367 786702 ~ 787874 (+) False LOC120565732
XM_039811716.1 mRNA upstream 44367 786702 ~ 787874 (+) False LOC120565732
XM_039811808.1 mRNA upstream 672784 141925 ~ 159457 (+) True LOC120565788
XM_039811565.1 mRNA downstream 31861 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA downstream 37080 891578 ~ 955236 (+) False grin3bb
XM_039812306.1 mRNA downstream 129153 983651 ~ 1009213 (+) True med16
XM_039811799.1 mRNA downstream 156249 1010747 ~ 1025143 (+) True plppr3b
XM_039811451.1 mRNA downstream 367835 1222333 ~ 1228679 (+) True trmt13
TU123859 other upstream 73265 722373 ~ 758976 (+) True G92019
TU123860 other upstream 73265 755595 ~ 758976 (+) False G92019
TU123696 other upstream 238364 580807 ~ 593877 (+) True G91903
TU123666 other upstream 265775 509141 ~ 566466 (+) False G91887
TU124034 other downstream 314323 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 348389 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 366312 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 366875 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 386889 1241387 ~ 1256194 (+) True G92169

Expression Profile