RNA id: XM_039811566.1


Basic Information

Item Value
RNA id XM_039811566.1
length 3502
RNA type mRNA
GC content 0.63
exon number 10
gene id grin3bb
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 886359 ~ 955236 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCCGTGATGTCTGCAGGGACAGAAGGGATAAAGCCAGCGGTTTGTAACTAAACCAGCCGAGAGCGGAGATGTCAGCAGGGACAGACGAGAGGAAACAGAGGTAAACAGAGAACCGGTTCCACCTGCAGATGGCGATGGGCGTTCCAGACTCGGCCCTGTCAGCGCTGCTGTTGGCGGTGTTGCGGCGTTCCGGTTGGCTGGAGGGAACCGTGGTTCTGTGCCGGGGCTGGGAGGAGGCCCGCGGGCTGCTGAGGCGGCTGGACGACGCCGGTGACAGCAGAGCATCATGGGACGGTGGCGGGCCCGGCTGGCACGTTCGCGCCGTCCTGAACCTGACGCAGTCGGCGCACGACGACACGCAGATCCACGACTTTCTCTCGCGCCACTTCGGGCAGAACCCAGCGGTCCCGGCGGCTGTGCTGCTGTTCGGCGCTGAGCCGCAGTGCGCGGCGGCCGTACTGCGTGGCGCCCAGGATCTGGGCCTCACGCTACCCATGATGCACTGGGTGCTGGGCCAGCCGCTGCGGCCCGACGCGCTGCACGCCATCGGCCTGCCGCTCGGCCTGCTGGCCTACGGAGAGGTGGAGCGCAAGCCGCTGGACTTCTACGTCACAGACGCTCTGATGCTCGTCAGCCGAGCAGTCGGCGCCGCGGCCGCCGTTAGGCCGGACCTGGCGCTGAGCCAGAACACGCTGCGCTGCCACGACACACCGCCGCCCGGAGGGCACTTCCTGTCCAGGTTCCTGTCCAACACATCGTTCTCCGGGCTGACTGGTACGGTGCGAGTGCATCCGAACCGCTCGGAGGTTGTGAACTCGCAGCAGTTCCACATCTGGAGTCTGCGGCGTGACGCGCTGGGCCAGCCCAGCTGGGTAACGGTGGGCCGCTGGGCTGCCGGCCGCCTCACCGTGGAGGAACAGGAAGTGTGGCGTGGACCCAAACCTCGGCAGCGCCCCGAGGGGCCGGACGGGGACACCCGGCGGCGCTGGAGGCCGGGCACGCCGGCCGCGGGGAGCTGGGTCCGGGTGGTCACGCTGGTGGAGCATCCCTTCGTGTTCACGCGGGACGTGGACGACGAGGGCCGCTGCCCCGCCGGACAGTTCTGCCTGGACGCCGGCGCCAACAGCTCCGATGCTCTGGAGAGATACTTCCGGGACGTGGCGGGCGGGAACAGCAGCTTCCTGCCTGCAGGGTTCAGCAAGTGTTGCTATGGTTACTGCGTGGACCTGCTGGAGAAGCTGGCGGAGGATCTGGGCTTCCAGTTCGAGCTTTACATCGTGGGAGATGGGAAGTATGGCGCGTGGAAgggcgggcgctggacggggcTGGTGGGGGATCTGCTGGGCGGGCTGGCAGACATGGCCGCCGCCTCCTTCAGCATCAACTCAGCGCGCAGCCGCGTCATCGACTTCACCTCGCCCTTCTTCTCCACCAGCCTGGGCATCCTGGTGCGCAGCAAGGACACGGCGGCACCCATCGGCGCCTTCATGTGGCCGCTGCACTGGTCGATGTGGGTGGGCATCTTCGCGGCGCTGCACATCACCGCGCTCTTCCTCACGCTGTACGAGTGGAAGAGTCCATACGGCATGACTCCGCATGGACGTAACCGCATCCGTGTTTTCTCGTACTCCTCGGCGCTGAACCTGTGCTACGCCATCCTGTTTGGACGCACCGTGGCCTCGAAGACACCAAAGTGTTGGACGGGCCGGTTCCTGATGAACCTGTGGGCCATCTTCTGCCTGCTGGTGCTGTCCAGCTACACCGCCAACCTCGCTGCCGTCATGGTAGGAGAGAAAACCTTTGAGGAAGTGTCGGGGATCCACGACGCAAAGCTGCACCATTCGTCGCGGGGTTTCCGTTTCGGGACAGTGAGGGAGAGCAGCGCCGAGGATTACATGAAGAAGAGTTTCCCCGAGATGCACGAGTACATGAGGCGCTTCAACGAGCCGACCACGCCGCAAGGAGTCGCCACGCTCAAGACAGATCCTCCCCAGCTGGACGCCTTCATCATGGACAAAGCTCTGCTGGACTACGAGGTCTCCATCGACGCCGACTGCAAACTGGCAACAGTCGGGAAACCGTTCGCCATCGAGggtTACGGTATCGGTCTCCCCCAGAACTCTCCTCTGACCTCCAACGTCTCGGAGTTCATCAGCAGATATAAGTCGGAGGGTTTCATGGATCTGCTGCACGACAAGTGGTACAAAGTGGTTCCCTGTGGAAACCGCGTGTTCGCCGTCACTGAGacTCTCCAGATGGGGATCAGCCATTTCTCGGGTCTGTTCGTGTTGCTGTGTGTGGGCGTGGCTGGAGCACTGTTGACCCTCGCCGGAGAACACGCCTTCTACCAACTCGTCCTGCCGCACATCCGTCGGCGCCAGAACCTCAAATACTGGCTGCACACATCACagaAGATTCACCGTGCTCTGAACATGACGTATGAAGACGTGAAGAGGCAGCGAGCCGACAAAGACAAAAGCTGTAACCTGGAGAAGTCTCAGCCCCCCCCaggcccccccgcccccccaccccccggaGCGTCGGCCAAGTGGAACAACGAGGCCAGTAAGGACGCTGCCGCCACTGCCGCCGCTAAGGATGCCCGAGACTTCAAGCGAGTCCACTTCAACCTGGAGACCCTCAACACGCGCCGCCTGCTCGCTCGCATCGCTACTTCTGAAGCCAAGGGAGGCGTGGCCAAGCCTGACGGGATGGGGGCAGCCACGCTGAGGGCGGGGCCTAACAGCAGACTGGGGGAAGCAGCGGGGCCTAACAGCAGACTGTGTGAGAACGGAGGACCGGGTGCTTCTCTGGCCAGCCTGGTGCTctcccttccctcctcctcctcctcctctacttccTGCTCCACCCGCCACAGTTTACCCAACACGTCTACGGCTGGAGCCCCGCCCCCAGCGGCTGGAGCCCCGCCCCCAGTGGCGATGGAGCCGCCGCGGCCCGGCGAGCTTCAGGAGCTGCAGGAACAGATCGATGAAATGAGGGACAAACTGAGGACGGCATTAGCCAGGAGGGCCCACATCCAGACTTCTCTGAACAAACCTGTTGCCACGGTGACAGACAACATGACAACAGCAGTAGGAGCAGCGTCCGCTGGCGCCCCGCCCGCTGGCGCCTCGCCCGCTTGCGCCACGCCCGCATGCGCCACGCCCACTGGCGCCCCGGTAACACCTTTCCCTGCTAACATGAAAAGCGTGACGACCATGACGGACCCGCCTCACAAAGTCCTGTCCAAAGTCCGGCCCTTCCACAGCAGAACGACCAATCAGAGGAGGTGATGCTCACTGTACCTGGCGCCCATTTTAAACTGTGATCCAGAATTAAAACCTGCAGAATTCAGCAGACTGTTTTTCTGCTCTGGGTGGCGATGTGTTAACATGTTTGATTTCATTTGGTTTTtgaatgtatttaaaatgtgtgtgagttCCGTGTGGCCGTGCTCATCAACCTTTACACAAGGTGGACATTTTAAACTTGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123920 lncRNA upstream 30875 860473 ~ 860703 (+) True G92062
TU123876 lncRNA upstream 65532 824574 ~ 826046 (+) True G92029
TU123874 lncRNA upstream 73253 816582 ~ 818325 (+) True G92027
TU123856 lncRNA upstream 117621 769473 ~ 773957 (+) True G92018
TU123869 lncRNA upstream 122904 765454 ~ 768674 (+) True G92022
TU123968 lncRNA downstream 9532 964768 ~ 965650 (+) True G92093
TU123969 lncRNA downstream 13755 968991 ~ 969912 (+) True G92094
TU123970 lncRNA downstream 13755 968991 ~ 1063760 (+) False G92094
TU123971 lncRNA downstream 15637 970873 ~ 971521 (+) True G92095
TU123979 lncRNA downstream 53486 1008722 ~ 1112847 (+) True G92102
XM_039811564.1 mRNA upstream 37080 832241 ~ 854498 (+) True wdr18
XM_039811713.1 mRNA upstream 83339 784199 ~ 808239 (+) True stx6
XM_039812306.1 mRNA downstream 28415 983651 ~ 1009213 (+) True med16
XM_039811799.1 mRNA downstream 55511 1010747 ~ 1025143 (+) True plppr3b
XM_039811451.1 mRNA downstream 267097 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 367169 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 582763 1537999 ~ 1574777 (+) True LOC120565564
TU123859 other upstream 132602 722373 ~ 758976 (+) True G92019
TU123860 other upstream 132602 755595 ~ 758976 (+) False G92019
TU123696 other upstream 297701 580807 ~ 593877 (+) True G91903
TU123666 other upstream 325112 509141 ~ 566466 (+) False G91887
TU124034 other downstream 213585 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 247651 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 265574 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 266137 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 286151 1241387 ~ 1256194 (+) True G92169

Expression Profile