RNA id: XM_039811584.1



Basic Information


Item Value
RNA id XM_039811584.1
length 4400
RNA type mRNA
GC content 0.44
exon number 17
gene id ssbp4
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25840802 ~ 25937832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gggggggtttctcTGGCTGCTTTCTTTGACAGGTGTTGAGTGGGGCAAAAGTCTTAAAACAGAATCCAGCATGTACGCCAAAGGTAAAGGAGCTGTCGTCCCTTCCGATAGCCAAGCGAGAGAAAAGTTAGCTTTATATGTGTACGAGTATTTGCTGCATGTCGGCGCACAGAAATCAGCACAGACCTTCCTGTCAGAGaTCCGATGGGAGAAGAACATCACACTTGGGGAACCTCCAGGATTTTTACACTCATGGTGGTGTGTATTCTGGGATCTGTACTGCGCTGCCCCGGACCGGAGGGAGACATGTGAACATTCCAGCGAGGCCAAGgctttccatgactatagtGCGGCCGCTGCTCCCAGTCCAGTGATGGGCAACATGCCACCCAACGACGGCATGCCAGGAGGACCCATGCCCCCGGGCTTCTTTCAAGGTCCTCCAGGATCTCAGCCTTCCCCTCACACGCAGCCTCCCCCACACAACCCCAATAATCCCATGATGGGACCTCACGGACAGCCATTCATGTCTCCACGGTACCCGGGTGGCCCAAGGCCCGCCCTCCGCATGCCAAATCAGCCTCCTGGGAGCATCCCCGGGTCACAGCCTCTCCTACCAAACAGCCTGGACCCCACCAGACCTCAAGGACATCCAAACATGGGAGGTCCAATGAGAATGAATCCCCCTCGAGGCATGGGAGGCATGGGCCCACAGaACTACGGCGGAGGGATGAGGCCTCCTCCAAACTCCATGGGGCCAGGGATGCCGGGCATGAACATGGGTCCCGGTGGAAGAGGTCCATGGCCGAACCCCAACACCAACTCAATAGCTTATTCATCTTCATCTCCAGGCAACTATGTGGGCCCTCCAGGGGGAGGCGGCCCACCAGGAACTCCCATCATGCCTAGCCCCGGAGATTCGACAAACTCAAGTGAAAACATATACACAATGATGAACCCTATCGGCCCTGGTGGAAATAGACCTAATTTCCCAATGGGGCCGGGTCCTGATGGGCCCATGGGTGGAATGGGTGCTATGGAGCAGCATCATATGAACGGATCACTAGGCTCTGGTGACATGGATGGGTTGCCAAAGaATTCTCCCAACAACATGGCAGGCATGAACAATCCTCCCGGCACTCCGCGGGATGACGGCGAGATGGCAGGCAACTTTTTAAACCCATTCCAAAATGAAAGTTATTCACCCAACATGACGATgagtgtgtgatttttttttattttttttattttagtttatcttttattttattttatttctttttcatctCCCCTTATCCCAATCTCCCTCTCCCATCCGCCCTGGTGCGTCTTGCATtaccctcctccccccctccctcactTCCTACCTCCTCCTGGTGGACGGTGTGCTGTGCCACACAGCCCCTGGGGATGCACCTGGAAAGCAGGACTCCCCTCAAGGCCCCTCATCCCAACGCCTGTAAAATGGGTTTAAGAACATGAAAAGGCCTCCAAGCAACAGGAAGGGTCTCTGCTCCGCTTCTTCTTCACCTGCCGGGCCGCCATACAGGCTCTAGGACAGTGAGAGCCCGAAACTGCTCCAAGCCTgtctctccaaaaaaaaaaaaaaaactgccctCATGGGTGGCATTCAAGCCCAAACAAGATGCCCCGCTGCATCTACCACCACTCCATTATATCACGCTGATTATAATTTATGAGGGCACGCAGTTGTTGACTGACAGGGGCCGAAAACCCTCATTCAAAAACTCAAAGAggaatgataataaaaaaaaaaaaggacagataATGTTATTTTAGGGCAAGAATGGTTTTCAtttaatgtttgtattttttgttgttgatggtaatattattgttataattttcaTAATTGATATTATTCTACTAATGTAGTTATGATTTCCTGTAAAGGGCACATTTTTATCTCAGCAGCAGCATCAACAATGACAGAATAAGCACACCCTCGAAAAATGCACAATGATTTTCTGTTTACATGATTTTTGGTTATTTGatgtttgtcttgtttttttttgtcacagccGGTCTCACTTCACAAACCTCTCCTCAAAACTTCTTCGGAACTTGTAGCTCCAGTTTCTGCCATCTAAATGTTTGTAGCAGCATTTGCATAAACATTCAAAGTCTTCACCTTTTTAATGAAGTAGTTTGTGCCGAGGCGTTAGTATCTCAGCTAAAACTATCCATACAGATTAAACGGAGGCTttctcaaagcactgctgtttTCTGGTACAAAGTGTCTGCTGATGCACCTGACTGATCATCTAGCTATCTTGTCTTAATAAGCACCCCTCCTCACCGTTTCCTATTGTTTTTACTGCATGGGAATGGCTCTGAggtgccagttctcattcagTCATAGACCGAGCGAGAGAGCACCTCTTCTCTGGATTTGGTCTTGTCTGTAAATACAACATATTTAGCTTGTACTgtggttgtttttattatttgttatttacaATTTGTCTGTGAATCCTAAAACGTGGTTCCTTCCCCTCCGTCACTTTGTTTGATTTCAACTTCACTGTGGACTCCAAGTGGCACTGTTTTCCTCCCAGGATTCATTCTGGTCTCTCGCCAATGTCTCCTTTTTGGACTGAGAGATATTGTAGGAGCTCAGATACACTCGGGAagcctgctttttttttttttttttaagtttgggGTGAACTCACAGATCCTGTATGATTGATCCACTTTCTTAACCCAGACAAGACAGGCTAAATAACGTAAAATGTCTCCTTGGAGCTCCCGTCGACCCTCAGCGAGTCCCATATGTACGGGATAATGGATCCGGAGCACTGGGAGGCTGCAGCAGCGCTGATGATGGGAGCAGAGTGATGCACCTTGGGGTTAACAGACCATGCATCGGTctaaagaagaggaagaataaTGGGACACTTTTGTAATGGATATATTTCCATTTTTGTGGATTGTTTTTAgcagattgtttttattttaaatgtattcaactgagaaaatgaaagcccaTAGAATCTGCACACAAAGAAAAGCATAGTTAAAATATTACGCTATTTAATTTGTTTCTTTCTGTATGTTATGTACTCTTGGCCTGATCAACTCTGTCACCGTTTCAAAGGGATACATTATCTCTCATAGCATCATACTGCAGCACTTCAACATGGCTGTGTTCAAACCAACAATAACTAAACAACCATTGGAGCCTCTACGGGTGATGGCGACGTACTTATCAATTTTCTGATATCAATGTGAACAGAGTGTACCTATTCAATAGGGACATCTCCAGGATTTGGCTATCAGCGGCCTGGGAACCACTCTCCAGTGTTTCTCCAATGTAGTGACACACACCTCCATCCTTTCCTCCAATCCCATCCCTCCCTCACCCCCCAAAACATCCCCTTCCCCCAttctttaatttccttttttgtaaatactgtataatgCATTTTGATATCATTGACATGTTTTGATATGTCAGTCACTACCAATGAATACAGCTAAaagtaaattataaataaatctgTCCATGTTTTTCATAGAGAAAGGATGCGCTGACTATTTGGCTCGTGTGGCTAAATTTCCATAAAAATGTATAGAATACAGTAAGACATTAAATGCAGACTGTATGCTAAATACTTTTGAGTGGAAGataggacagagagaggacaggacAGATAGAAGCAAACAAGCTGTGGGGTCCTCACTCTGCCCTCGTCTCCTTTTATGTTTCAGTTCAATGTTACTATTGGCTTTGAATAATCATTTGAATCATTTTTCCAAAGGGCATCTTCTCACAAGAAACATGTGGCCTCTTATTGCAGTTTTTAATATGAAGGATTTTTATCAATTTAAGaacttttaaaaaggtaaaaatactTAAGAGAACCTCATTTTAAATTAAGAATAGATCAAAAAGCAACTGTGTGCTTTGCTATTCGCTCCTGTTATAGCGTTGTATAGATCGAAGCTCTCTCACTGATCCTCTCTCAGTCCTCTGTGTATATCGATCGTTGGCCATCTCTGTACTTCTATTGTGATGTATAATACTGTACCATTAGGAAGATTTGCTGGTCGGGTGGGGTGGTATTGTTGAGTCGGGGAGGGGTTGGGATTCAAGGGAAGGAGATATAAATTATTCTCCTGTACCATTCATGGTCCTTTCTGATGACACGGCAGTATTCGATATGAAGCAGTCTGTCTCTTGGGTTTGCTTTGTATTTTCATGGTAGGATAGTTCAGAATCTTGTCTTAGGGACTTAGGTGTCTTGTGTAGGTAATAAAAGATGTTCTTTGTATGTTTCTTTATATTGTAAAGTTTCTTTAGactgaaagaaaaacagatAATTTGcttatcaaaaaagaaaaaatgcatcAATAATAAATGTCCTTTGATTTTT

Function


GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640280.1 lncRNA upstream 3055 25786331 ~ 25837747 (+) True LOC120565749
TU132636 lncRNA upstream 3422 25786325 ~ 25837380 (+) False LOC120565749
TU132603 lncRNA upstream 100253 25739131 ~ 25740549 (+) True G98280
TU132489 lncRNA upstream 232411 25558113 ~ 25608391 (+) False G98196
TU132490 lncRNA upstream 267927 25558113 ~ 25572875 (+) False G98196
TU132705 lncRNA downstream 96929 26034761 ~ 26039847 (+) False oaz1a
TU132719 lncRNA downstream 197405 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 197445 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 254036 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 354268 26292100 ~ 26292440 (+) False zbtb7a
XM_039812326.1 mRNA upstream 56364 25769993 ~ 25784438 (+) True tmem59l
XM_039812330.1 mRNA upstream 85146 25748875 ~ 25755656 (+) True rex1bd
XM_039811748.1 mRNA upstream 102013 25730225 ~ 25738789 (+) True slc35a3a
XM_039810898.1 mRNA upstream 111326 25678536 ~ 25729476 (+) True notch2
XM_039811880.1 mRNA upstream 177098 25653862 ~ 25663704 (+) True sec22bb
XM_039812115.1 mRNA downstream 916 25938748 ~ 25951039 (+) True fkbp8
XM_039811384.1 mRNA downstream 13898 25951730 ~ 25983878 (+) True ell
XM_039810693.1 mRNA downstream 53674 25991506 ~ 26019371 (+) True dot1l
XM_039810694.1 mRNA downstream 53674 25991506 ~ 26019371 (+) False dot1l
XM_039810695.1 mRNA downstream 53675 25991507 ~ 26019371 (+) False dot1l
TU132604 other upstream 108625 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 293713 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 966928 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 966928 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 1056921 24781918 ~ 24783881 (+) True G98012
XR_005640198.1 other downstream 53674 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 854855 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2090140 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2199437 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2834556 28772388 ~ 28774510 (+) False LOC120565530

Expression Profile


XM_039811584.1 Expression in all Baseline Samples

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XM_039811584.1 Expression in each Bioproject

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XM_039811584.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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