RNA id: XM_039811585.1


Basic Information

Item Value
RNA id XM_039811585.1
length 4055
RNA type mRNA
GC content 0.44
exon number 14
gene id ssbp4
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25840802 ~ 25937832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTGATGGCGATGACAGTTGCAGGCGGCGTGGAGAGGAATTCCTGGTTTGGTTTCGGAGATAACGGAGATGCACGAGATGAAACCAGCCATTTGTCTGCAAATCAGTCTGCAAGCTACAGAAACTACATGTATGGACACACAATGGAGTGTTCATTCCCGCGCAAGCACATCCCAACGTACACATCCATGTTTTAAAACTCAGagtGCGGCCGCTGCTCCCAGTCCAGTGATGGGCAACATGCCACCCAACGACGGCATGCCAGGAGGACCCATGCCCCCGGGCTTCTTTCAAGGTCCTCCAGGATCTCAGCCTTCCCCTCACACGCAGCCTCCCCCACACAACCCCAATAATCCCATGATGGGACCTCACGGACAGCCATTCATGTCTCCACGGTACCCGGGTGGCCCAAGGCCCGCCCTCCGCATGCCAAATCAGCCTCCTGGGAGCATCCCCGGGTCACAGCCTCTCCTACCAAACAGCCTGGACCCCACCAGACCTCAAGGACATCCAAACATGGGAGGTCCAATGAGAATGAATCCCCCTCGAGGCATGGGAGGCATGGGCCCACAGaACTACGGCGGAGGGATGAGGCCTCCTCCAAACTCCATGGGGCCAGGGATGCCGGGCATGAACATGGGTCCCGGTGGAAGAGGTCCATGGCCGAACCCCAACACCAACTCAATAGCTTATTCATCTTCATCTCCAGGCAACTATGTGGGCCCTCCAGGGGGAGGCGGCCCACCAGGAACTCCCATCATGCCTAGCCCCGGAGATTCGACAAACTCAAGTGAAAACATATACACAATGATGAACCCTATCGGCCCTGGTGGAAATAGACCTAATTTCCCAATGGGGCCGGGTCCTGATGGGCCCATGGGTGGAATGGGTGCTATGGAGCAGCATCATATGAACGGATCACTAGGCTCTGGTGACATGGATGGGTTGCCAAAGaATTCTCCCAACAACATGGCAGGCATGAACAATCCTCCCGGCACTCCGCGGGATGACGGCGAGATGGCAGGCAACTTTTTAAACCCATTCCAAAATGAAAGTCCCCTGGGGATGCACCTGGAAAGCAGGACTCCCCTCAAGGCCCCTCATCCCAACGCCTGTAAAATGGGTTTAAGAACATGAAAAGGCCTCCAAGCAACAGGAAGGGTCTCTGCTCCGCTTCTTCTTCACCTGCCGGGCCGCCATACAGGCTCTAGGACAGTGAGAGCCCGAAACTGCTCCAAGCCTgtctctccaaaaaaaaaaaaaaaactgccctCATGGGTGGCATTCAAGCCCAAACAAGATGCCCCGCTGCATCTACCACCACTCCATTATATCACGCTGATTATAATTTATGAGGGCACGCAGTTGTTGACTGACAGGGGCCGAAAACCCTCATTCAAAAACTCAAAGAggaatgataataaaaaaaaaaaaggacagataATGTTATTTTAGGGCAAGAATGGTTTTCAtttaatgtttgtattttttgttgttgatggtaatattattgttataattttcaTAATTGATATTATTCTACTAATGTAGTTATGATTTCCTGTAAAGGGCACATTTTTATCTCAGCAGCAGCATCAACAATGACAGAATAAGCACACCCTCGAAAAATGCACAATGATTTTCTGTTTACATGATTTTTGGTTATTTGatgtttgtcttgtttttttttgtcacagccGGTCTCACTTCACAAACCTCTCCTCAAAACTTCTTCGGAACTTGTAGCTCCAGTTTCTGCCATCTAAATGTTTGTAGCAGCATTTGCATAAACATTCAAAGTCTTCACCTTTTTAATGAAGTAGTTTGTGCCGAGGCGTTAGTATCTCAGCTAAAACTATCCATACAGATTAAACGGAGGCTttctcaaagcactgctgtttTCTGGTACAAAGTGTCTGCTGATGCACCTGACTGATCATCTAGCTATCTTGTCTTAATAAGCACCCCTCCTCACCGTTTCCTATTGTTTTTACTGCATGGGAATGGCTCTGAggtgccagttctcattcagTCATAGACCGAGCGAGAGAGCACCTCTTCTCTGGATTTGGTCTTGTCTGTAAATACAACATATTTAGCTTGTACTgtggttgtttttattatttgttatttacaATTTGTCTGTGAATCCTAAAACGTGGTTCCTTCCCCTCCGTCACTTTGTTTGATTTCAACTTCACTGTGGACTCCAAGTGGCACTGTTTTCCTCCCAGGATTCATTCTGGTCTCTCGCCAATGTCTCCTTTTTGGACTGAGAGATATTGTAGGAGCTCAGATACACTCGGGAagcctgctttttttttttttttttaagtttgggGTGAACTCACAGATCCTGTATGATTGATCCACTTTCTTAACCCAGACAAGACAGGCTAAATAACGTAAAATGTCTCCTTGGAGCTCCCGTCGACCCTCAGCGAGTCCCATATGTACGGGATAATGGATCCGGAGCACTGGGAGGCTGCAGCAGCGCTGATGATGGGAGCAGAGTGATGCACCTTGGGGTTAACAGACCATGCATCGGTctaaagaagaggaagaataaTGGGACACTTTTGTAATGGATATATTTCCATTTTTGTGGATTGTTTTTAgcagattgtttttattttaaatgtattcaactgagaaaatgaaagcccaTAGAATCTGCACACAAAGAAAAGCATAGTTAAAATATTACGCTATTTAATTTGTTTCTTTCTGTATGTTATGTACTCTTGGCCTGATCAACTCTGTCACCGTTTCAAAGGGATACATTATCTCTCATAGCATCATACTGCAGCACTTCAACATGGCTGTGTTCAAACCAACAATAACTAAACAACCATTGGAGCCTCTACGGGTGATGGCGACGTACTTATCAATTTTCTGATATCAATGTGAACAGAGTGTACCTATTCAATAGGGACATCTCCAGGATTTGGCTATCAGCGGCCTGGGAACCACTCTCCAGTGTTTCTCCAATGTAGTGACACACACCTCCATCCTTTCCTCCAATCCCATCCCTCCCTCACCCCCCAAAACATCCCCTTCCCCCAttctttaatttccttttttgtaaatactgtataatgCATTTTGATATCATTGACATGTTTTGATATGTCAGTCACTACCAATGAATACAGCTAAaagtaaattataaataaatctgTCCATGTTTTTCATAGAGAAAGGATGCGCTGACTATTTGGCTCGTGTGGCTAAATTTCCATAAAAATGTATAGAATACAGTAAGACATTAAATGCAGACTGTATGCTAAATACTTTTGAGTGGAAGataggacagagagaggacaggacAGATAGAAGCAAACAAGCTGTGGGGTCCTCACTCTGCCCTCGTCTCCTTTTATGTTTCAGTTCAATGTTACTATTGGCTTTGAATAATCATTTGAATCATTTTTCCAAAGGGCATCTTCTCACAAGAAACATGTGGCCTCTTATTGCAGTTTTTAATATGAAGGATTTTTATCAATTTAAGaacttttaaaaaggtaaaaatactTAAGAGAACCTCATTTTAAATTAAGAATAGATCAAAAAGCAACTGTGTGCTTTGCTATTCGCTCCTGTTATAGCGTTGTATAGATCGAAGCTCTCTCACTGATCCTCTCTCAGTCCTCTGTGTATATCGATCGTTGGCCATCTCTGTACTTCTATTGTGATGTATAATACTGTACCATTAGGAAGATTTGCTGGTCGGGTGGGGTGGTATTGTTGAGTCGGGGAGGGGTTGGGATTCAAGGGAAGGAGATATAAATTATTCTCCTGTACCATTCATGGTCCTTTCTGATGACACGGCAGTATTCGATATGAAGCAGTCTGTCTCTTGGGTTTGCTTTGTATTTTCATGGTAGGATAGTTCAGAATCTTGTCTTAGGGACTTAGGTGTCTTGTGTAGGTAATAAAAGATGTTCTTTGTATGTTTCTTTATATTGTAAAGTTTCTTTAGactgaaagaaaaacagatAATTTGcttatcaaaaaagaaaaaatgcatcAATAATAAATGTCCTTTGATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640280.1 lncRNA upstream 70492 25786331 ~ 25837747 (+) True LOC120565749
TU132636 lncRNA upstream 70859 25786325 ~ 25837380 (+) False LOC120565749
TU132603 lncRNA upstream 167690 25739131 ~ 25740549 (+) True G98280
TU132489 lncRNA upstream 299848 25558113 ~ 25608391 (+) False G98196
TU132705 lncRNA downstream 96929 26034761 ~ 26039847 (+) False oaz1a
TU132719 lncRNA downstream 197405 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 197445 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 254036 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 354268 26292100 ~ 26292440 (+) False zbtb7a
XM_039812326.1 mRNA upstream 123801 25769993 ~ 25784438 (+) True tmem59l
XM_039812330.1 mRNA upstream 152583 25748875 ~ 25755656 (+) True rex1bd
XM_039811748.1 mRNA upstream 169450 25730225 ~ 25738789 (+) True slc35a3a
XM_039810898.1 mRNA upstream 178763 25678536 ~ 25729476 (+) True notch2
XM_039811881.1 mRNA upstream 244535 25653862 ~ 25663704 (+) False sec22bb
XM_039812115.1 mRNA downstream 916 25938748 ~ 25951039 (+) True fkbp8
XM_039811384.1 mRNA downstream 13898 25951730 ~ 25983878 (+) True ell
XM_039810693.1 mRNA downstream 53674 25991506 ~ 26019371 (+) True dot1l
XM_039810694.1 mRNA downstream 53674 25991506 ~ 26019371 (+) False dot1l
XM_039810695.1 mRNA downstream 53675 25991507 ~ 26019371 (+) False dot1l
TU132604 other upstream 176062 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 361150 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1034365 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 1034365 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 1124358 24781918 ~ 24783881 (+) True G98012
XR_005640198.1 other downstream 53674 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 854855 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2090140 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2199437 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2834556 28772388 ~ 28774510 (+) False LOC120565530

Expression Profile