RNA id: XM_039811588.1


Basic Information

Item Value
RNA id XM_039811588.1
length 1066
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC120565665
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30397268 ~ 30403012 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCATCCTGTGACACGGTATTTACAGAGCATGCGCATGAGAATCTTCCTTTTTCCAGTGCAGCGGAGTCAAGCCCCAGTCTTTGGCTCCGGGCTCCTTCATAAGGAGACAAAAAGACTGCAAAATGGGTTTTGTTAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTCAAattcaggaggaggagagAGGGAAAGACCGACTTCTTTGCTCGCAAGCGCCTGGTTGTACAAGACAAGAACAAGTACAACACCCCCAAGTACCGGATGATTGTCCGTTTCTCTAACAGGGACATCTGCTGCCAGATTGCCTATGCCAAGATTGAGGGTGATATGATCGTGTGTGCAGCCTACTCTCATGAGCTGCCAAAATACGGGGTCTCCGTTGGCTTGACGAACTACGCAGCAGCCTACTGCACTGGTCTGCTCCTGGCCCGTAGACTTCTAAACAAGTTTGGCCTGGATAAGGTGTATGAAGGCCAGGTGGAGGTGACAGGTGATGAGTTCAACGTGGAGAGCATTGATGGTCAGCCAGGCGCTTTCACCTGCTACCTGGATGCTGGGCTTGCTAGAACCACCACAGGCAACAAGGTGTTCGGTGCCCTGAAGGGGGCTGTGGATGGTGGCCTGTCTATCCCACACAGcACCAAGCGCTTCCCTGGGTATGATACAGAGAGCAAGGAGTTCAACGCTGAGGTTCACCGCAAGCACATCATGGGCATCAATGTGTCAGAGTACATGAGCTACCTGATGGAGGAAGACGAGGACGCTTACAAAAAGCAGTTCTCCCGCTTCATCAAGAATGGAGTCGCCCCTGATTCGATCGAGGAGATGTACAAAAAGGCTCATGCTTCCATTCGTGAGAACCCTGTCCATGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAGAGGTGGAACCGTGCCAAGCTCTCTCTGGCCCAGAGGAAAGACCGTGTCGCCCAGAAGAAGGCCAGCTTCCTCCGGGCTCAGGAACAGGAGGATGCTGATTGAGATGCTGCTCCCTGTGGAAATTTGTTCTAATAAATCTATTGAAAAAGA

Function

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134066 lncRNA upstream 7629 30388821 ~ 30389639 (+) True G99406
TU134037 lncRNA upstream 52094 30211483 ~ 30345174 (+) True G99379
TU134036 lncRNA upstream 52094 30344329 ~ 30345174 (+) False G99379
TU134042 lncRNA upstream 109151 30287064 ~ 30288117 (+) True G99382
TU134013 lncRNA upstream 205428 30185707 ~ 30191840 (+) True G99368
TU134141 lncRNA downstream 59548 30462560 ~ 30463389 (+) True G99461
TU134171 lncRNA downstream 118633 30521645 ~ 30522066 (+) True G99488
TU134177 lncRNA downstream 125814 30528826 ~ 30529088 (+) True G99493
TU134178 lncRNA downstream 126597 30529609 ~ 30529820 (+) True G99494
TU134215 lncRNA downstream 277494 30680506 ~ 30680716 (+) True G99527
XM_039810394.1 mRNA upstream 82796 30311202 ~ 30314472 (+) True LOC120565064
XM_039810386.1 mRNA upstream 86243 30262977 ~ 30311025 (+) False btbd8
XM_039811702.1 mRNA downstream 24499 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039811703.1 mRNA downstream 47689 30450701 ~ 30460738 (+) True scinla
XM_039812227.1 mRNA downstream 74819 30477831 ~ 30481380 (+) True dr1
XM_039810360.1 mRNA downstream 78502 30481514 ~ 30485822 (+) True LOC120565046
XM_039810361.1 mRNA downstream 78502 30481514 ~ 30485822 (+) False LOC120565046
TU133929 other upstream 732178 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1622758 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2250943 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2312881 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 3601529 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 24491 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 407506 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1219686 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1226804 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1230553 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile