RNA id: XM_039811606.1


Basic Information

Item Value
RNA id XM_039811606.1
length 2325
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120565681
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4599472 ~ 4603153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTATTACAAGTTTAGATGTGACTTCTGTTGCTGGGAAATGAGCATCAAGCCGTGTTGAGACAGCACTGAAGACTTTATATGCAAAAGCCACACCTCAGACTTTTCTCTTCAAAGCAGCATCAGGTGCAAATCTAACTCATATTTAGGTCGAGGAGGAAACAGCTGAATGATGAGTGCTGCTCAGAGTCAAACAACACTGGAGTCCAAACTGGAGGCCCTGCAGTGCCACTTCACCTGGGATCTGGACCCCAGCAAGTCCATGCTGTTACGTCGCGAGGAAAAGTTCGAAGACATCGGCACCGAGGAGGGGAACAGCTGGCTGGGTCACATTTACAACCTGCGGGGGTTCGTTCAGTACAAGCTGGGGTTCACCGAAGACGCCCAGAGTTTCTTCAACAAGGCTGCAGAGGCCTTCAGCAAGATAAGAAACGCAGATGAGGGTCCCTGGTTGGTGGTGAACTACGGGAACCTGGCGTGGCTGCACCACCACCTGGGAGACCAAGCAGAGAGTCAGGCTTACCTGTCAAAGGTCAACGCCCTGATGAATAAATACCCATCTCCATCCCAGGACCAGCTCCATCCAGAGATCTACGCTGAGAAAGGCTGGACCCTGATGAAGTTCAGCAGAGAGCAAAAGAAAGAGGCTGCAGATTACTTCCAGAGAGCCATCAGGATGCAGCCGGACATGGTGGAGTGGAACAGCTGCTACGTCTTTGGGTTAGTGTATACTTGTGATCACAGCGACACAGGGCAGGTGGCTGACCTTCTGGAGAAAATGAGAATCGCCAAGGAACAGGATCCAGAGAACATGTTCCTCGCTGTTCTCTACCTTGAGCAATGTGCAAAGAAAGGAGAGATAATCAAAGAAGAAGCACGTGAGTTAGCCAGGAAGGTTTTGAGAAATCCTGTCAGCAGCTACAGTGGTATTATACAATTACTATATGTTTACAGATACCATGTTTCTATTGATGAGGCCATTGATTTGGCAGAGGAGGCTCTGAGAACCCATCCAGATGAGCGTTATCTGAAGAGATGTGCTGCACTCTGCTACAAATGGAAGATCATGTATGTCAGGGACAGTCGCCCAAATCCAAGCGTGATAGACAGAGCAATCAGTCTCCATAAAGAGGTGATTGCTCTCTACCCTCATTCTTCACTTGCAAAGAAAATAGAACTCGCAAGTATATACGCAAAGTTAAATTACAGACAGGTTGAAGCTGAGCAGATGTACCAGGAACTGCTAGAAAGTGATCTGGAACCTGCAGACAAACAGATGATTTACAACATCTATGCAAAACATTTATTCTACGACCGACAGTACGACAGATCAACACGAaatcacatgaatgcagcagcgATAACGCATCAATCCTTCTATCGTGAGAACAGCATCACAACTCTGAAGAAGAACAGAGGCAGGAGCCACATGTGGAGAGAAGTAGAGGTCTTCCTGGCAAACCTGCAAGAGCCATAGTGTTTTTAACAGCACTGGTTCTAAATCCAGAAATGTATTACACATCAGGAAACCCTGTTTTCTTCTGTTGTTTGTCTGGGCAGCAACACTCCTTCAAAGGCGTCACAGGATTACTTTGCTTCCATTGGCTCTTAAGAGACAACAATGTTAATATGGAGGATAGTTTTACTcagaatttaaattaaaaagggaaaaaggcaCTGACACAATACTCAAAACATGTTTCAACTCATTGttggtttttgtcttttcttgttATTGCAAAGATGAGATGTATCCTTAAAAGGCAGGTTTTTACACTTTGCCCGAGCCAACTTTTCATGTTTGTTTCAAACAAAGTGTGTTGATTGGCTATTGACTATGTTATGTGGTCATCTGTTAAGTAACAACTAATAGACTATTAGGTTGCCTCCATAgacatttataataataatggacaaatagtccGGGCCTGAAGATTGAAGCCAATGCGGAGATGCCTTAAAGCATGGAAGACAAAGGctgtttaaaattaaaaaaattgtacATTTTTCCTGATAAACGTCAGCAGTAAAATTAATATTGAGCAGAATTGAGTTTAGGATAGTGGTCCGGCCCTCCACAACAGTCCCTGTTTCTCATGTGGCCCCTTGGGAAAATGAATTGCCCACCCCCGCTAGATATATGACAAGCTGAATCATTTAATAACACGGGTCCTTTAAATATCATCCACTGTGGACATGTCATTACATGATTAATTCAACGATTTTGATCAGATGGTTTTCTTTACCGCAGTGtaacataataacataataCTCTCTTGTTAAAATTGGCTTTGctttaagaaaaataaatggttGGTAAAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125841 lncRNA upstream 93498 4500549 ~ 4505974 (+) True G93286
TU125842 lncRNA upstream 93498 4500549 ~ 4505974 (+) False G93286
TU125852 lncRNA upstream 97420 4496053 ~ 4502052 (+) True G93288
TU125859 lncRNA upstream 132161 4461129 ~ 4467311 (+) True G93293
TU125861 lncRNA upstream 134038 4460271 ~ 4465434 (+) True G93294
TU125902 lncRNA downstream 89570 4692723 ~ 4752958 (+) False G93323
TU125903 lncRNA downstream 89570 4692723 ~ 4743783 (+) False G93323
TU125904 lncRNA downstream 89570 4692723 ~ 4748307 (+) False G93323
TU125910 lncRNA downstream 108121 4711274 ~ 4785944 (+) True G93327
TU125901 lncRNA downstream 124515 4727668 ~ 4759060 (+) True G93323
XM_039811598.1 mRNA upstream 79879 4515052 ~ 4519593 (+) False LOC120565674
XM_039811597.1 mRNA upstream 80044 4515052 ~ 4519428 (+) True LOC120565674
XM_039811596.1 mRNA upstream 155948 4439340 ~ 4443524 (+) False LOC120565669
XM_039811594.1 mRNA upstream 157268 4439340 ~ 4442204 (+) True LOC120565669
XM_039810180.1 mRNA upstream 179691 4408643 ~ 4419781 (+) True prpf38a
XM_039811615.1 mRNA downstream 54608 4657761 ~ 4662185 (+) True LOC120565686
XM_039811612.1 mRNA downstream 54608 4657761 ~ 4661437 (+) False LOC120565686
XM_039811614.1 mRNA downstream 54608 4657761 ~ 4661437 (+) False LOC120565686
XM_039811513.1 mRNA downstream 82071 4685224 ~ 4713233 (+) True trmt1l
XM_039812507.1 mRNA downstream 111502 4714655 ~ 4784151 (+) True niban1a
TU125644 other upstream 302062 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 305582 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 381646 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 992647 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 1006088 3592105 ~ 3593384 (+) False LOC120565459
TU125908 other downstream 108408 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1432216 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1598932 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1751744 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2746657 7349810 ~ 7350587 (+) True G93938

Expression Profile