RNA id: XM_039811615.1


Basic Information

Item Value
RNA id XM_039811615.1
length 1621
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120565686
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4657761 ~ 4662185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttttatatatgtcaatggtgtgCACACAGCTCCCCGCCAAGTTGTATATGGTTAATGTCGCCTGTTACTTTAGATTGAATAAGTTCCACATTGGTTTTCTGGAAGTTTATCAATAACCGCTTGGATTCATAAAGTAGGCCTCAGGACTCCTCATATATTTCAACATGGTGTCAGAAGAGGGATGAATTCATCGCCTCCAAGTTCCACGTGACTTTTTGTTTTCGTCTCGAGCGGACACACAACTCAGTAGAAATAATGGCGGATGGATTCCGCAGACCAGACCCCGTCGTTTTTGACGGGAACGTGGCCGAGAATTGGCGGATTTTTGAACAGGATTATGATATCTTCATAGCAGCGGCGCACTCGGACAAGCCTGCCAAAACAAAAGCGTACATCCTGCTTAATCTCGCGGGACCGGAGGCCATCGAACGGGAGCGCTCGTTTGTTTACGCGGCGGAGGTGAGGGCGCCCGGTGGAGACGGAGCCGTCGTGGTTCCAGCTGAATCCAGAGAAAACCCGGAGTGTTTGAAACGGAAATTTCGTGAAGTGTGTAACcctcaacaacacaacaacaaaaccatgGAGAGACACAAGTTCCATTCACGAAATCAAAAGCAAGGTGAGACTATTGAGTCCTACGTCAGTGACTTGAGGATCAAAGCTGAAAGTTGTCACTTTGGAGACCTGACGGAGGAACTGATTTGTGACAGAATAGTGTGTGGCATCAGGAATGACAACATAAGAAAGGCGTTGCTACGTGACAGTGAATTAACCCTAACGAAAGCCATTGCTATCTGCCGCATGTATGAAATGACTGAGGAGAATAATAAGGCTCGAGCCCAGCCCCAGACGGCCGAGGCGGGTACGGCTGCAGCCCGCAGCGTCCCATGTCACGCAGTCCCGTCTCATGCCGAGGCGTGTCCAACGGTACACATcagtgtctttaaaaaaaataacacacccCCGGTGACACGATGCACGGTGTGCTGTACCGACCATCATTGCCCCCTTTGCCCCACTTCCATATACAAGCCCCGGTGTAGGGCAAAGGTTTTGCAGCACATGGAGGTGCATGTAAAGAATGCCATTCAACATGAAGATTTCTTCATAACAAAATGCCACCAGGCCTGCAGGAGTGGAAGCAGTGGTCACTTCCACTGCCCTTTCTGCCTCAAGACCACAATAAAGAGGCAGGCCATACTGAGGCATTTGCAGATCTGTAGGCCACCTCTCCATGACGCCCAGCTGGACGCTgatgcagactgcagagagatGGGCGTCAATTCCCAGACAGAGGAGTGCAAAGCAGGATCTGTGAGCCTACCTCATATCAGCTCTGACAAACTGCCTGAACCGgTACATGATGGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCAAGGATAAGGAGGAGGCAAAGAGGCCCAGGACAATCCCTCCTCAACAGTCGGTGAGGTTGGACGAGGAAGGCGGAGTGAGCTGCGATAGCTGGGACAAGTTCTGGGGACCCCCCCACCCTGGATTCTGATACGGCAGGATTTCCTGAGGAGGGATAACAAGGATCTGCACACACaagaatacaaataataaacatGTTACACTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125881 lncRNA upstream 50968 4592376 ~ 4606793 (+) True G93308
TU125841 lncRNA upstream 151787 4500549 ~ 4505974 (+) True G93286
TU125842 lncRNA upstream 151787 4500549 ~ 4505974 (+) False G93286
TU125852 lncRNA upstream 155709 4496053 ~ 4502052 (+) True G93288
TU125859 lncRNA upstream 190450 4461129 ~ 4467311 (+) True G93293
TU125902 lncRNA downstream 30538 4692723 ~ 4752958 (+) False G93323
TU125903 lncRNA downstream 30538 4692723 ~ 4743783 (+) False G93323
TU125904 lncRNA downstream 30538 4692723 ~ 4748307 (+) False G93323
TU125910 lncRNA downstream 49089 4711274 ~ 4785944 (+) True G93327
TU125901 lncRNA downstream 65483 4727668 ~ 4759060 (+) True G93323
XM_039811606.1 mRNA upstream 54608 4599472 ~ 4603153 (+) True LOC120565681
XM_039811598.1 mRNA upstream 138168 4515052 ~ 4519593 (+) False LOC120565674
XM_039811597.1 mRNA upstream 138333 4515052 ~ 4519428 (+) True LOC120565674
XM_039811596.1 mRNA upstream 214237 4439340 ~ 4443524 (+) False LOC120565669
XM_039811594.1 mRNA upstream 215557 4439340 ~ 4442204 (+) True LOC120565669
XM_039811513.1 mRNA downstream 23039 4685224 ~ 4713233 (+) True trmt1l
XM_039812507.1 mRNA downstream 52470 4714655 ~ 4784151 (+) True niban1a
XM_039812521.1 mRNA downstream 190763 4852948 ~ 4873356 (+) True mettl11b
XM_039812508.1 mRNA downstream 272576 4934761 ~ 4946307 (+) True gorab
XM_039812509.1 mRNA downstream 304374 4966559 ~ 5000440 (+) True prrx1b
TU125644 other upstream 360351 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 363871 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 439935 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1050936 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 1064377 3592105 ~ 3593384 (+) False LOC120565459
TU125908 other downstream 49376 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1373184 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1539900 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1692712 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2687625 7349810 ~ 7350587 (+) True G93938

Expression Profile