RNA id: XM_039811640.1


Basic Information

Item Value
RNA id XM_039811640.1
length 4150
RNA type mRNA
GC content 0.48
exon number 10
gene id bcl6aa
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 41086373 ~ 41105748 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCACTGCTGTAGTCGATGGTTTGTGCTCCTATGGTTTAATGAGATTTTAGATTCTCCGTTCAAATGAATTATAGATAGGAAAACTGGGATTATTTTACAGGCTGTTtaatctcttcctcttttttttgccCCACGGTTTCAGCATTCGTGGAAACGTGGAGCGAATGAGTGCTACAATCAATGAACGCTAGAGTGCAGGCGGCCTATCAGCTCAGAGAGCAAGAGATGCCCTGTGGACCGGTTCACTAACATGAAGCGTGCTCAGTCGACTTGACTCACTTCAGCCCCGCTGCCGCGCCCGCCTTTCCAAAAGCGTTCCCATCCTGCTGAACACTGACAGACATGAGGCTTCACCAGAGCTGCTCCGCCACCGCCTGACTCAGACTCAGTGCCCTCTTGCACTGAAGACAGCTTCATCCCTCCAGCTTAGGGAGGGGGCGGTGGGGGGGACCAGTCAGACTCTGCATCCTGGAACATATTACTTGCCAGAAAAATACAACTCTGGTGAACACAGTTTGGGTGGGTTGTGTTTTTGCTGTGCTGGACCTTACCATAGTCAGGTAGAAAAGTTGATTGATCTCAGTGAAAAGACTTTTTTTGGAACTGCAGAAGAGGCCCCCCTTCGCTTGCTGAACCTCGGCTCACAGCTTTGAATTCAAGGCGCAGGCACTTCCTCCTTGATTTCCACTACAGATCCCATCATGCCTCACTCCTTCCAGCAGAAAAAAGCTCAGCAGATGCTCCTGCTGTGCCAAGGGGTGAACGGGATGAGAAAAGACGGCGAATCCGTGGTTTGGAATCACCACAAGCAAAGTTTCCACGAACTTGACAAAATGGCTTGCGCAGCAGACAGCTGCATACAATTCACACGCCATGCAAGTGATGTCCTGCTCAACCTGAATCGGCTGCGTAGCAGAGACATTCTCACAGATGTCACTATCTTGGTTAACAGACAGCAGTTTCGTGCACACAAGACCGTTCTCATGGCTTGCAGTGGGCTGTTTTACACCATCTTTACTGACTCCCACAAGTGCAACCTTAATGCGATCAGTCTGGATCCAAAGGTGGACCCAGAGGGCTTTGCCATCCTGCTGGAGTTCATGTACACCTCCCGTCTCACACTAAAGGAGAGCCTGATTATGGCGATCATGAACACCGCCATCTACCTGCAGATGGACCATGTTGTGGACACCTGCCACAGATTCATCAAGTCCAGTGATCCGGCTGCCAAGCTGCCCAGAGATGAGTTTTTGATCAGTCCCTTGGTTCTACCTCAGGATGTCCATGCTTACCGGCCCCACGATGTGGTCGACAGTTTGCACAGCCGCGTGGCTCCGTTCAGGGATGGGAGGCCCTACGGCTCAAACATTTTCAACGGGGTCAGCACCCCCAGCAACTACCCATTCTACGGGCAGTTTCCCATGCCAGGATTCCCTTTCCCTCTCTGCAAGCTGACTGATGCCAAAAACACTTTTGCTGACCTCTCTAAGAGTGGGATCCACCACAAGCATTGTTCTCCGCATGACAGCGCCAACCTCATCAGGGCAGAATACAGCAGGGCGGTTGGCACTAGCTCCTCCAGCATTATTCACTCCACCACCTACGCTTCCAGGGAGGTAGCAAGAGACGACGAGATGCGGAAGGAAAGCCACGAGGGGGTCAGCCAGTCTATCGCTCTCGGCACAAGAAAGCGTGCGTTTCCTGTGCTGACCCTGGAGCACCAGAGAGACTCTGGAAAAGATCACGCTCCTCAGGCAGAGGAAGACCTGATCCATCAGCACTACCCCCTGGGGATCTCCTCCGCTGGACGCAAGAGCCTCATGAGCAGCCCACAGAGCCCCCTCAAATCAGACTGCCAGCCCAACTCCCCAACAGAGTCCAGCAGTAGCAAGAACGCCGGCCTGTCCCAAGCTGCCGGAGTACAAGCTCCGCAAGGTACACAGGACCCCAAATCTCGCAACTGGAAAAAGTACAAGTTCATCGTGCTGAATCAGAGTGCTAAGGAAGACGAGGGGGGGCTGCGGGATCCTGGGCTTCGTTCCCCTCAGCGCCTCGGCCTGCCGCCCTACCTCCACCCCAGCGACTCAGAGAACCTCGACCCACAAACCACAAGCAAGAGCAGTGATCCCAGCGAGGACCTGCCCGTGCCCCAGGCTAGTCGTCTcaacaacatcatcaacagTGCACTGGAGGGGTCACTGAGGAACGGAGACAGCCACCCTCCACACTACTTGAGCCGCCTGAACTGCTCGACCTGCGGCACGCCGTCCCCAAAGCACTCCGAAGTGTGTCCAAACACCTCCAGGACCCGTCTGGCAGAGGACATGGCCGAGCTGCACTCAGAATACTCCGACTCCAGTTGTGAAAACGGTACATTCTTCTGTAATGAATGCGACTCCAAGTTTGCCGAAGACGAAGCGCTGAAACAACACATGCTCCAAGTGCACAGCGACAAGCCATACAAGTGTGACCGCTGCCAGGCTGCTTTCCGCTACAAGGGCAACCTTGCAAGCCACAAGACTGTCCACACAGGAGAGAAGCCGTATCGCTGTAATATCTGTGGTGCTCAGTTTAACAGACCAGCTAACCTCAAGACTCACACTCGTATCCACTCAGGAGAGAAGCCATACAAATGTGAGACGTGTGGAGCTCGTTTTGTACAGGTTGCTCATCTCCGCGCCCATGTGTTGATCCACACGGGTGAGAAGCCATATCCCTGTGAGATCTGTGGCACGCGCTTCCGTCACCTGCAGACGCTGAAGAGCCACCTGCGTATACACACAGGAGAAAAGCCCTACCATTGTGAGAAATGCAACTTGCACTTCCGCCACAAGAGTCAGCTACGGCTGCATCTTCGACAGAAGCACGGCGCCATCACCAACACAAAGATCCAGTACCGCATGTCGACGGCAGACGGGCCCACTGACTTGACAAAGGCATGCTGAGCTGGGGGAAGGGAACAGTTTTAATGGAGGCAATCTTGACCTTGGCATTTAAAGACCCCAACTTGTACAATCATCCAAAATTGTAGTGCCACACTGTGTTCATTAGACAAATAAATTGGCTGTGTACGCCATTCTAAACGGGTTTCCACTACATGTGAACGTAGAGCCACTTATGGCATCTTAGTCACTTTATTGTTTCTATATAgatatggatatatatatatatatatgtatatgtcgGGAGTGTTTCTAAGCTTTGAAGGTACATATATATAAAGCTTTATTTTGTTGAGAAGGATGGAATGTAAACTAATCTGTTTTTTgaaaatacagtattttatatcAGAGAACTTACTTTTCTGAAAGTATTGAAAATTTTGATTGACGGGTGGTACATATATTTTAAGATTCTGAGATTTGCGGCTGTATAGGGTTGTCTATACATTTTTATGTAGATGTACGTACATGTTGCACCATATCAAGTTGCCATATTCATgtgacgaaaaaaaaaaaaaaaagtcctaatgTAATTGGATTTAGTAAAAAACATATCAGATGACTGCTGCTGTCTGATGAGGTTATGCATGAGGTACTCTATTACCGTTGCCAGTTGTCAGCGCACATGAAGTGGACAACTGCATAAATATTGTGAGATATTGTGTAATTATATCTGTGGGATTGCTCTCTGCTGGCAGAGCCAATCTAAGTGTTGAAAATGCATTTCAAGGTACTGCTTTGTTCTGACCAAGAAAATATTTTGCTTTAAGTGTATTTGTATAGAtgtgacttttgtttttgtttattggtTTTCCATAAGTGAAGTTTACAGTTTTGTCCTTGTTCTAGATCCTACAGTAAAGTTGTGCAAGTGTCGATATTTTTGGTTTGTACATACACTGTGTATTCAATGTGCCTTTCTCTCTATGGTGTCTGAATTCCTCGTTATTCAGCCCAGCTCTATTAAGGTACAACTCAAGGACATCACTTGTCCTAtaccccgtgtgtgtgtgtgtgtgtgtgattgtgtgtgtgtgtatatatatttttaaatgcttttcaCCAACCTTAAAACATGCAAATTCATCATTGTACATCTTCAGGACTTGTTTTGGGATTGGGCTTTTTTAACTGCATTAAAATTATTGTACAATGGTATAGATGtatgaatgtaaaataaaggTATTGGATTTCTATGTATTAACAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15618 BCL6; B-cell lymphoma 6 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137338 lncRNA upstream 146056 40860037 ~ 40940317 (+) True G101990
TU137134 lncRNA upstream 577006 40508891 ~ 40509367 (+) True G101832
TU137133 lncRNA upstream 578614 40507500 ~ 40507759 (+) True G101831
TU137125 lncRNA upstream 599352 40486791 ~ 40487021 (+) True G101823
TU137096 lncRNA upstream 825764 40260363 ~ 40260609 (+) True G101796
TU137361 lncRNA downstream 5825 41111573 ~ 41114235 (+) True G102006
TU137362 lncRNA downstream 7528 41113276 ~ 41114235 (+) False G102006
TU137378 lncRNA downstream 49174 41154922 ~ 41156467 (+) True G102021
TU137379 lncRNA downstream 50804 41156552 ~ 41157040 (+) True G102022
TU137438 lncRNA downstream 103912 41209660 ~ 41268656 (+) True G102074
XM_039811886.1 mRNA upstream 338996 40737734 ~ 40747377 (+) True zbtb11
XM_039812404.1 mRNA upstream 363538 40715933 ~ 40722835 (+) True dpt
XM_039810126.1 mRNA upstream 403131 40657846 ~ 40683242 (+) True nme7
XM_039810119.1 mRNA upstream 435543 40644671 ~ 40650830 (+) False LOC120564870
XM_039810211.1 mRNA downstream 120862 41226610 ~ 41227656 (+) True im:7152348
XM_039811878.1 mRNA downstream 421653 41527401 ~ 41533655 (+) True zgc:103559
XM_039811879.1 mRNA downstream 421653 41527401 ~ 41533655 (+) False zgc:103559
XR_005640166.1 other upstream 533416 40515093 ~ 40552957 (+) False atp10a
TU136718 other upstream 1520418 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 1621923 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 2205768 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 3596301 37463914 ~ 37490072 (+) True G100843
unassigned_transcript_390 other downstream 119343 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 119886 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 346926 41452674 ~ 41453306 (+) True G102165

Expression Profile