RNA id: XM_039811647.1


Basic Information

Item Value
RNA id XM_039811647.1
length 3152
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC120565703
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10543708 ~ 10553852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGGGCTATGAAGTGGCTGGTGATTTTTGTCACGCTGGGCATGTGCTCACAGGCATCAGCTATCCAAGTATCCGTGTTCTCAGTAACATCCAAGAGCGCGATTCTCAGATGGACCAGGTACTCTGGAGCCAGCTCATACAAGATTACTGTCGCCCCCCAAAGCTCACAAAACAACCCCATTGCTTTTGCCACGTTTGGTCCAAACACAGTGCTGGGCTCTGTCAACTCTCTGACCCCGAACATCCTGTATACATTCACAGTTGAAGCCCTGGATGATTCCCAATTAAGACTGAGCTCTGCAGTTGTGGATTCATTCACAGCCCCTGAGATTATGGATCCCATCCAGACCTTGAAGCCAAAGGATAGCACTACCTTGATGGTGGGGTTCAGCTTGAATACCGGGGCGACTCATTACATCATACGAATCCAGAATGATGATGGCTTTTTCAGAGAAGACCAAGTGTCCTCCTCCCCCGCTGAGATTGAGTCCCTCTCGCCATACACTGAGTACGAGCTCAGCATCATGTCTGCGAACAGGGGAGGCCGGAGCCAGCCGTCTCTTCCTGTGACTGCAAAGACAGTTTTGCCTCCTCCTCAGCTCTCCACCTCCTCTCCCAGCAATGACAGCATCATTGTATCCTGGGCCCCTGTTGCTCACGCTGTCCAGTACAGCCTGTCTATATACGACTTTGGCTCTAACACCAACATGAAGTACAACACCTCCGACACCAATTTGACCATCTCAGGCCTGGCTGCTGGCTCACTCTATGCCATCAAGGGTTTCGCCTGGGACCTCGAGGGCCGAGAGGGAGAGGGCAGTCTGGTCATCAACCAAACAACAAGACCACCTACGCCATCTTTTGTCAATGTCTCTATTGTGACGATTAACGGTGTGGCCGGACTCTCTGTATCCTGGAAACTTGATCAGGATGTCTATGGATCAGTCCAGTACCACGTACTGAGTGACCAGAACCGCACATGTAACTCCACATCCAGCTCCTGCATACTGTCGGCCGTGGGCTGTGGAGAGGTACACACTATCCAGGTCATCGCCTTGAACACAACTGGACCCAGCTTCCCATCCAGCCCTGTGGTGTTCATCACCTTCCCCTGCCCACCAGAGTCTTTGGCTCTTGTGGAGTCAACAGAAGGAAACTGCACGCTAACGTGGGGCACGGTGCCTCATGCCGACAGCTACGTGGCCTTCTTCAAGAGAGGTGACGGCACCGAGGAGACCTGCAACACCACCAGCAACAACTGCAAATACCACTGCCTGTGTGGCTACACATACCTGCTGTCTGTGTATGCGTACAATGAGGCTGGCAGCAGTCCTCAAGGACAGATTCTCAACTATACCACCTTGCCCTGTTGTCCAGAGGGTGTATCGGTCTCTGTGGTGAGCACTGACACTCTGGAGATTGTGTGGATGGCCTCGCGGGGGGCAGAGCTGTACCAGACTCGGGCTGCAGACAGTTCAGAGGTCATCCTGTGTAACGACACAGCACCCGTGTGCGCTCTCTCTGACCTCAGCTGCGACAGTCCCTACAGCGTGGTGGTGACACCCTGCAATGAAATCAGCGGATGCAACCATGCATGCAAAGCTCACACCAAAGACACAGCTGCTTGCATGCCGATGAATCTGATGCTGAATCCGAAGAACTCCTCCTGCGTCAGTGTCAGCTGGACAGCAAACAACAGGGCTGCTAATTACACTGTGAGCGCGTCGGGAGATGACGGCCAACACACCTGCACCACCAGCGGAAACAGCTGTGACATCACAGACCTTCCATGTGGCTCCACTTACGAAGTCAGCGTCATAGCAACCAGCGCAGCCGGCCAGAGTTTACCCAGCTACTCTGACTATCTGGAAACAGAACCCTGTTGCCCGATGAATCTAACAGTGGAACAGGTGACACAGGCAGTGAGCAACATCTCGTGGTCTCACGCCAAGGGGGCGCATTCATTCATCACTTCCCTGACATCAACGCGTGGCCACGCCCGCTGCCACACCCAGGACTCCCACTGCCTCGTGGGATGCATCACCTGTGGGACCAACTACACTGTCACCATGGAGGCGTTCAGCAAAAGCGGGAGCATGTCCAACTGCACCTATGAGGGCTTCTCGTCCAGTGCCTGCTGTCCGTCAGGTGTCAGGCTCTACAGTATAGCTGGGAACTCTCTGCGAGTGTACTGGCGCAGCGCTGGCAGCAGCCACAGCTACGTCACAGAGATGGTGGGCAGCAGCAACAACTACACCTGCACTGCCTCTCCCGGAGCAAGcagctgtgattttggcaacaTCCAGTGTGGGGACGTCTATCATGTAATGGTGGCTCCGCTTACACCAGAGGGCAGCAAAGTCCTGTTCTGCCCCCAGAGACTGTACTCTGTCACTTGCTCAGGGAGCAACGTTGGCACAGTGATTTACAGAGGGAAGAGAAGTGTGAATTAACATACGATGCAACAAACTCCTCCatcttcttcatcttcctcttcctcctgctctACTGGAATAAAGCCATATTCATAGCTAAACAGAAAAACAGCTGTTAACCTGTGGCATACATGGGTGATAACATGAtggataataataaatacatgtttggGATATGATTAGGTGTTTTAAACTTGCCTTTTAAATAATGTTCATGTATATCACGGCCAAACTAAACCATCACTGTGCCCTCAACAATTAAGATCATCACTTACCTGACAAAAACAAGCCAACCAAAAGagtgcattttgtgtgtgctgcTTAAAATATATATCATGAGACAAAAGCATGGATTTTGTAAATGTAAGAGTTTCTCATGATAAAACTTACAAACAACTATAACTAAAttcactacatatatatatatatatatatatatgagtatcAGTAACAGTGCCCCTCCCaatatttttaaacaatttCACCTCTTTTGTTTTAAGACTTATGAATTACAAAATGTaccaaatttaaataaaaaagaattgtAGGTGCAGCCCCAAGTACAAAGCCTCCTGATGATAAGTGGCAGATACTGATCTATGTCACCTCATCCTGCTTCACACTGTAGCGTATAATTTCTGCAGTGTGCTGTTGCTTGTTCTCAGGATGTATTTCTGTGTTGAATATGTGTCACTGTGGTTGTGAAAACCCGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127515 lncRNA upstream 12327 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 34170 10507652 ~ 10509538 (+) True G94450
TU127411 lncRNA upstream 129947 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 138475 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA upstream 184920 10346197 ~ 10358788 (+) True G94427
TU127597 lncRNA downstream 157351 10711203 ~ 10711496 (+) True G94587
TU127612 lncRNA downstream 363073 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 394651 10948503 ~ 10948822 (+) True G94604
TU127624 lncRNA downstream 409696 10963548 ~ 10977065 (+) True G94609
TU127628 lncRNA downstream 442625 10996477 ~ 10997201 (+) True G94613
XM_039812196.1 mRNA upstream 40642 10493529 ~ 10503066 (+) True zmat3
XM_039812410.1 mRNA upstream 92726 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA upstream 92726 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA upstream 92726 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA upstream 92726 10440585 ~ 10450982 (+) False kng1
XM_039811527.1 mRNA downstream 38985 10592837 ~ 10609226 (+) True LOC120565623
XM_039811026.1 mRNA downstream 63523 10617375 ~ 10627039 (+) True henmt1
XM_039811027.1 mRNA downstream 63523 10617375 ~ 10627039 (+) False henmt1
XM_039811028.1 mRNA downstream 63729 10617581 ~ 10627039 (+) False henmt1
XM_039811765.1 mRNA downstream 99787 10653639 ~ 10668886 (+) True slc25a24
TU127375 other upstream 383901 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 595478 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 640519 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 697727 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 697904 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 363073 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 393124 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 694723 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 875179 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2451724 13005576 ~ 13100445 (+) True raver2

Expression Profile