RNA id: XM_039811652.1


Basic Information

Item Value
RNA id XM_039811652.1
length 3970
RNA type mRNA
GC content 0.47
exon number 18
gene id fxr1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9967354 ~ 9979742 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTCCAGCCTTCAAACTTCTTCTCTCCCGATGCCTCAAGGAGCACCTGTCGTCCCGACATCCTTTGCGTGTCCAATATGGAGGAACTGGTGGTGGAGGTCCGTGGCTCCAACGGGGCTTATTACAAGGGCGTTGTCAAAGATATCCACGATGACTCTCTCACCATTGCCTTTGAGAACAATTGGCAGCCAGAGCGCCAGGTGCCCTTCAATGATGTCAGGATGCCACCACCCGCTGATGCCAAGAAGGAGATTGGAGAGGGCGAGGAGGTGGAGATCCTCTCTAGAGCCAATGACCAGGAGCCGTGTGGTTGGTGGCTGGCTAAAGTCCGCATGATGAAGGGAGCTTTCTATGTGATTGAGTATGCAGCCTGCGATGCCACCTACAATGAGATAGTGACCTTTGAGCGTCTGCGTCCAGTCAACGCTAACAAGGCCATCACCAAGAACTCCTTTCACAagtgcactgtccctgttccTCAGGATCTACAAGAAGCGTGCCAGAATGAGAACGCCCATAAAGACTTTAAGAAAGCCGTGGGAGCCTGTCGCATCTCATACTGCCCCGAGACCAGCCAACTACTGATTGTGTCTACCAATGAGACGACAGTGAAGCGTGTGTCTTTGCTGAGTGACATGCACCTGCGCAGCATCAGGACCAAGCTGCTGCTAATGTCACGCAACCACGAGGCCACAAAACACCTGGAGACCTCCAGACAGTTGGTGTCGTCCTTCCAGGAGGAGTTCATCGTGCGAACAGATCTGATGGGCCTGGCCATCGGCAGCCATGGCAGCAACATCCAGCAAGCACGGAAAGTTCAGGGTGTCACTGCCATTGACCTCGATGAGGAGACTGGCACCTTCAGGATTTATGGAGAGACAGCGGAGGCAGTAAGGAAGGCGAGGAACTACCTGGAGTTTTTGGAGGACTCTGTCCAGGTTCCCAGGGCTCTCGTTGGCAAAGTGATTGGTAAGAACGGTAAGGTCATCCAGGAGATTGTGGATAAGTCCGGTGTGGTGAGGGTCAGGATCGAAGGAGACAATGACAACAAGCAGCCCCGACAGGAATTGACACAGGGAATGGTCCCATTCACCTTTGTCGGTACTAAGGAGAGTATTGGCAATGTTCAGGTCTTGCTGGAGTATCACATCTCTTACCTCAATgagatGGTGAAGCTTCTTGCGGAAGGCCAGCAGCTAGAGGAAGAGCTGAGGCAGATTGTGGATTATACACAGGGAAGCAGCCTAGCAAGATTCAGAATAAGCAACACAAGGCACAATGGATGCGATGTAGATGAGGTTGAGCAGCTTCGTCTGGAGAGGATGCAGATTGATGAACAGTTACGTCAGATTACCCAGGGTCACCGCCCAGGTGACCGAGAGAAAGgcgagagaggggaaagaggaggtggaggaggaggaggagggtatAATACAGATAACGGTGCCAATGCCTCCTCTACCTCTTTACATGGCAGTCGCTCCTACAACGGTCGAGGGCGTGGTCGCCGAGGCCATGGCTACAGCACTGGATATGGCACCAACTCCGAGCAGTCCAACGCCTCTGAGACAGATTCAGAGCGCAGGGAGGAGCTCAGTGACTGGTCTCTTGCTGTAGAAGACCAGGAAAGggagagggagagaggctcacgaccacaaagagatgGCCGCAGGAGGCCTGGACCCGGCAGAGGTCGAGGAGGGCCTGGAGGAcgggggagaggaggaagaggaggatacAACAGCTCTGCAGGGCCCCGGGACCATGAGGATAACCATGCCTACGGAGCCGCGGAGACAAACACCGAGACAGACCAGACAGCTGATACAGATGCTAGCGAGTCCAATTTGCCGGCAAACCGCCGCAGGAGATCGCGACGGCGCCGAACAGACGAGGACACCACACTGATAGATGGCATGAGCGAGTCAGACAACGCCTCCATGAGTGAAAATGGAATAGTGACCGTGGCTGACTACATATCCCGGGCTGAATCTCAGAGCAGACAGATGACTACCACCAAGGACACCAAGAAAAACAAGGATGTGGGTCAGGTGGATGCCATTGCTGAGGACAGCCCACCGTCTGCCCCAGCAACCACTAATGGTTCTAACAACGATGCTGCCGTCAGTAAAGGCAGCAATGCCACCGGAGCTTCCGCCAAAATCTCCTTCAAGGGGGACTCTAACCCGCAACCTGTTGTTAACGGACTCTCCTAGTCAGACCCGAGCAAAGGAAATGGTTTCAAATATTTGAAATTCTTTGGCTGCACTCGATTAAATCTCCCAGTCTCTGGAGCAGCCTTTAAAGTGaaacaacatttaaacacaagcactgttcattttttttattttattttacaagtatTTGAAACCTGCTTCACTGCGCAAGTTTTAGAGGTCTGAACCTTAACCTCCCCTTTACACACTTGTTCTGTCCAACTATTCAttttaatacagtttttttttaacaatagtTCTTCCTGTATGAGCTTGCCAAAGatagtcaaacacacacagacttacagACATATACCTAACTGTACTTTTTGGTCCACTCTTCATTGAGAACTCAAGGAGAGGTTGGACTGAATGCAGTATTTCTAAAATGCAGACAGGGATTCCACTCAAACCCATACTATGGTATGAatgcagtttttgtttttttatcagtaCAAATATTATCATAGCAGGATTTTAGAGCAGAAACGAGTCTGCCTTTAACCATGTGGACTCAGAACGCTGCTTCCACAACCTTTTTCAGGATGTTTTGTGTATCTCAAGTAGTTTTGTAAATGACATTTTCTGCATGAGCACTACCACAGTGCAGATAGGTTTGTTGGAATCCCAAGTATGTTTGACATACATGTGATCATCTGTTGTGCCTTGAGAGTAGATTCAACATGTTGTTGCCTGGCTCTGTACACCATCTGAAATCTTTTCACTTATTTCTGTGTTACTTGGTCACCACCGCCTGCCACAGTTGAACCAGATGAGCTGCCTCCTTGATGTGCTATATGTGCCCTTATGGCACTGGAGGCAAACACTGAAAGACACTGAATGGATTTCAGAGGCATATCTTTAAAATCAGGTGTGTCTATTCTTAATGTTTGTGGGGGGAAATGAGTCCAGttattctttatatatatatatatctgttgaGGAGTTTGACATTAGCTGCTTTCTGTTTTTCAATATGCAACCACTTTGGTCATACAAGAAATGTTATTACAGCGTGTctggaagagaaacaaaccataGAAGAGTTGTTTTCTTTGCACTGAAACATAACCTTTTTCTGTTAAAAAGTTGATTGTAGTTGAGTCTGGAAACTGGCATGTTACTATTAAGTGCTGGACAAAGATGTAGCCATCAGTGCTGGGTTTCCTGGAAACATCTCATTGATAAACATTTAATCAAATACATGACAAGAGGGATATTGAGTGTTGGTTCCTACCAGAAATCCAGCTAAATCAAGAGACTCAATGCACGTTTGCAGTATCTTGGGAGGTTAATATCCCCTTTTACATGTCCACTATTGCAAAAATCCTGTTTTGATTATTGTGGTGTTAAGATGTTTCTGGAAAACCAAGCCCAGGTcacagtgatgtcattttcatgGTTCTTCCACAGATTTACTGGCTGGaaactggtcatgactgttccACTAAGGAAGGAgatttatttggtttatttatttaaaaatgtacagtatttaaaaaaaacaaaaagcaaaaacaagagaatcttttctttttcttgacaCTAAAATATGCGTTACCTAAGGTTTTCTTTTGAGACAACTGACAATTTGGACTACTGAGAGTTGTGACACCAAGTGTTTTTGTTGGGTCaactacagtattttttttttttttttttaaggatcaTTCTGGTTGGTTGATGTGCAATATGTTTTGTATGCAGGTAGTTCTTAAATAAACTTGATCTTCCATGTAGATCTAAAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640304.1 lncRNA upstream 55254 9908907 ~ 9912100 (+) True LOC120565916
TU127336 lncRNA upstream 65232 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 274321 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 287617 9673431 ~ 9679737 (+) True G94259
TU127153 lncRNA upstream 294551 9662132 ~ 9672803 (+) False G94259
TU127377 lncRNA downstream 1680 9981422 ~ 9983844 (+) True G94400
XR_005640261.1 lncRNA downstream 5977 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA downstream 6111 9985853 ~ 10159881 (+) False LOC120565490
XR_005640262.1 lncRNA downstream 9125 9988867 ~ 10159881 (+) False LOC120565490
XR_005640259.1 lncRNA downstream 94443 10074185 ~ 10159881 (+) True LOC120565490
XM_039811407.1 mRNA upstream 19117 9933613 ~ 9948237 (+) True ttc14
XM_039811524.1 mRNA upstream 101899 9851125 ~ 9865455 (+) True LOC120565621
XM_039811523.1 mRNA upstream 121079 9844271 ~ 9846275 (+) True LOC120565620
XM_039811353.1 mRNA upstream 170365 9785792 ~ 9796989 (+) True LOC120565507
XM_039811520.1 mRNA upstream 182214 9766076 ~ 9785140 (+) True hps3
XM_039811316.1 mRNA downstream 133240 10112982 ~ 10115322 (+) True sox2
XM_039811525.1 mRNA downstream 383720 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 460816 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 460816 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 460842 10440584 ~ 10450982 (+) False kng1
TU127361 other upstream 19124 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 64165 9902285 ~ 9903189 (+) True G94376
TU127191 other upstream 88156 9817621 ~ 9879198 (+) True G94281
TU127375 other downstream 94464 10074206 ~ 10159807 (+) False LOC120565490
TU127611 other downstream 937183 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 967234 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1268833 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1449289 11429031 ~ 11444533 (+) False LOC120565923

Expression Profile