RNA id: XM_039811659.1


Basic Information

Item Value
RNA id XM_039811659.1
length 2496
RNA type mRNA
GC content 0.44
exon number 12
gene id cth
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19574855 ~ 19586645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACCATCCTTCGGTAATGCACACTCATCCTCAGTTCACTGCGGTATACGTTTAGGGGAGCACGCGCCATGGATCAAAATCACAAACAAGACGAGCAGAGCGACTTGTTCGCCGGCTTTAGTTCGGGGTATAAATCGTTCGCCACAGAGGCAATTCACGTTGGCCAAGAGCCGGAGCAATGGAAATCAATGGCTGTAGTGCCGCCGATTTCCCTATCTACAACATTCAAGCAGCTCGGACCAGGAAACCACGCCGGGTTTGAATACAGCCGGAGTGGAAACCCTACAAGAAACTGTCTTGAGAAGGCGGTGGCTGCTTTGGATGGAGCAAAGTATTGCATTGCTGTTGCCTCGGGCCTGGCAGCCACAGTGACCATCACTCACTTGCTTAAGGCAGGTGATGGAATCGTCTGCATGGACGACGTGTACGGAGGCACAAACCGCTACTTCCAAAGAATTGCCGTTGAACTTGGTCTGAAGGTGTCTTTTGCTGACTGTACAAAACCAGAGCTGCTGGAGGCTGCTCTGAAGGCCAACACTAAACTGGTGTGGATTGAGACACCCACCAACCCCACAATGAAGGTTGTTGACATCAAGGCCTGTTCTGAGGTGGCCCATAAATACAACAAAGACATAGTGGTGGTCGTGGACAATACCTTCATGTCTGCCTTCTTTCAGCGCCCCTTGGCTTTGGGAGCTGATATCTGCATGTATTCAGCTACCAAATACATGAACGGTCACAGTGACGTGGTAATGGGTCTGGCCTCAATGAACCGGGATGATCTGTATGAGCGACTGAAGTTTCTGCAAAATGCACTGGGCTGTGTACCATCTCCCTTCGACTGCTTCCTATGTAACCGAGGACTGAAGACCCTACACCTGCGAATGGAGCGGCACTTTAGGAATGCCATGGCTGCCGCCAAGTTTCTGGAGGCAGATCCCAGGGTGGAGCAGGTCCTCTTCCCAGGCCTGCCCTCTCACCCCCAGCATGAAGTGATGAAGAGACAATGCACCGGATGTCCGGGGATGATTACCTTCTACATTAAGGGAAAACTGGAGCACGCCAGCACCTTCCTCAGTAACCTCAAAttgtttGCGATAGCTGAGAGTCTTGGTGGTTATGAAAGTTTAGCAGAACATCCGGCAATTATGACCCATGCATCAGTGCCAGAAAACGAGAGGAGAGTCCTGGGGATCAGTGACACACTCATCCGACTCTCCGTGGGCCTGGAGGATGAGGCTGACATCATCGAAGACCTGGAGCAAGctcttgctgctgctCATCCAAAGAAGAAGTGAAATGTCTTCAGGGCATCCTCGAGGCTGAGGTTGAAATCAATCGAAGTCGAGATGAAGACTGGAGGTACCTGAAGTCTCAAATCATCGCAGATCAACACTTGGTACCTCCATTCAGCGCACAAGCAGCAGAGATACAACTATCAGGGAACAACttgttctttaaaaaataaaaatcgtgCTATCTGTGAATACTTAACACAATTTTTACATGAGAATCTTTTTAATGCCTATTTTACTAGAACATCAGTTAAGTAATCGTATTTATCTTATGCTGGGTTTTGCTTTGTTTTAcgtttggttttgttttgtttggaagGCTTTAATCGGCTGTAGTCCTATTCATTCAAGGCTGATACAGTATACGTTTCTGcaggaaaaacaaacacactttcTGTATAATCTTGCTATAAACCTACTTCGGGCTGCAATCTAGTTTTGATACACAGAACAGTCTCCAAATGTAACTGCCCCAAGTACAACTGCAGCTGTAATCTGTATTAATAATTTCCTAATTCTAGCTGGCAAAGCTTCCTCTGTAAAAGAGGTAAGCACGTATTAAGGATGTCTCATTAATCAGATGAACCAGACTCACATGGCAAAGTTAATGTCCCCACCTACTGTCCAAAAGTCAAAAACTCTTTAATGTCAACATCTGCTCAAAGATTTGATGctttttcagaaacatttaaataattttatgaAGAACAAACAATAtctccattcatcattaatataaatttgtgtatttggttgcaGAATGTTAATATTATGCTTCATCAAGTGTATGCCTTgtaaagaagaggagaggaatcCTATTCCTCACATTTGAGACTAATCGGGATATTTGCCAATAAATGAGGGAGTGTTTGGTAAGCACATGCCTTTATTTGGAGCACAATTTCCCAGCATTGATATGAGGTTTTTATAATAACAACTGAAGGTTATTATAGGAGTATTTCTCAGAATAAAGTTTGATGACACACTTGATGTGTGTTCTTGAACTCAAGTCAAAGCGTTTGGGCcaatgaccaaaaaaaaaaaaaaaggtcagaatTTGCATGTTTTGTATCTGCAGAGAAAAATGTTTCACTCAGGCACTTCCACCTGCTGCTCTCCCACACTTCATTTGGGACAGACCATTCACCATCAATGTCATGTATGTAACTGACAAATCCATTAAAATCAGTTTGCAGTATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130157 lncRNA upstream 63647 19488090 ~ 19511208 (+) True LOC120565771
XR_005640283.1 lncRNA upstream 64045 19387232 ~ 19510810 (+) False LOC120565771
TU130147 lncRNA upstream 187652 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA upstream 239940 19334176 ~ 19334915 (+) True G96489
TU130108 lncRNA upstream 287182 19279469 ~ 19287673 (+) True G96455
TU130324 lncRNA downstream 90523 19677168 ~ 19683076 (+) True G96613
TU130321 lncRNA downstream 97505 19684150 ~ 19685085 (+) True G96610
TU130327 lncRNA downstream 164475 19751120 ~ 19751372 (+) True G96616
TU130372 lncRNA downstream 414183 20000828 ~ 20002125 (+) True G96648
XR_005640277.1 lncRNA downstream 460373 20047018 ~ 20047372 (+) True LOC120565691
XM_039811787.1 mRNA upstream 45361 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA upstream 45361 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA upstream 45361 19520945 ~ 19529494 (+) False LOC120565772
XM_039811429.1 mRNA upstream 233799 19338866 ~ 19341056 (+) True fam43a
XM_039810842.1 mRNA upstream 522887 19044010 ~ 19051968 (+) False htr2b
XM_039810777.1 mRNA downstream 569765 20156410 ~ 20256593 (+) False adgrl2a
XM_039810779.1 mRNA downstream 569765 20156410 ~ 20256593 (+) False adgrl2a
XM_039810792.1 mRNA downstream 569765 20156410 ~ 20256593 (+) False adgrl2a
XM_039810794.1 mRNA downstream 569765 20156410 ~ 20256593 (+) False adgrl2a
XM_039810785.1 mRNA downstream 569765 20156410 ~ 20256593 (+) False adgrl2a
TU130185 other upstream 43178 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 789219 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1702444 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1703008 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1706053 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 2104252 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2697001 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2898866 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2906312 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 2985414 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile