RNA id: XM_039811660.1


Basic Information

Item Value
RNA id XM_039811660.1
length 3945
RNA type mRNA
GC content 0.49
exon number 27
gene id ect2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 32221033 ~ 32411447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTTACTCTTGCCCAATCAGCGCGCTGCACCGTTGTTTGCCTTGCTTTTTGAATTAAGTTCGGGCAAATACCTACTCGGGACTACTGTTAAGCAGTTAGCTAGCTGTCAACAAGTAGCCACATTTCGACAATTTGGACTATTCACGCATAAAGGGCAACATGCATTGACACCAGACTTGCCATATAACGAAGAGATATTATAGATTTTTTGAGTGTTTTGGACCGAAGAGGAATTCTCGGGAATTCTTTATTGTATTGTTGACTTGAAgttactagctaacgttagctcggtaGCTAATTTAGTTAGAGAGCTTATTGAATGAAGTTAGCTCGCTCCCGTTTCTGTAATTCTTTGATATAGCTAGCTAAGTTACCAGCCACCGAAACAGTCGTTTGGACAATTTGGTGCCTCCACAAGTTCCTGGCATGGCTGACAGCAGCATAGTGACTCTAGGGACAGCTCGGAGTTTGCTGGATTCTTCGGTCTATGATTCGAAGATCGCCGAAACCACCAAGGACCATGTATTTATGGGGATGACATGTGAAGACGGGGAAGATATGCTGCCAAAAGTGGAGACAAGGGTTGTTCTTGTGGGAGAAGCAGGCAGAAATGGAGCGCTGGTCAAAGCATTGCAGGCCATCAGAGTAATGGAGGTACCAGTGGTAAAGATAAGAGAAGGTGATGCAGGCGCCGAGGAGAAAGTGATGATAAAATCTATAGTCAATATGGACATTAACATCCCTTGCATAATGACGGACAACGTCCAGGAGTTTGGAGATGGAGACAACGCTGATTTCGAGACGGTGTTCGTCCTCACAGACTTTGATTCTTCTGACTACAACTATCTCTACAAACACGACAACCGCATTGTTGGGCCTCCTGTTGTGCTACACTGTGCTGCGAAGGAGGAACCTCTACAATTTTCATGTCGTCCTCTCTACTCCACTACAATGCTTAACCTGTCGCTGTGTTTCACTGGCTTTAGGAACAAAGATGAAATGAAGAACTTGGTGAATCTGGTTCATCACATGGGTGGGACAATCCGGAAAGACTTCAGCACCAAGGTTACTCATCTCATCGCCTACTCCACTCATGGAGAGAAATACAGGCTGGCGGTGTGCATGGGGACGCCTATTCTCACTCCCTCATGGATTCATAGATCCTGGGAGAGAAGAGATGATGTGTACTTTCATGCAGGGGAAGAGGAGTTTCGAACAGAGTTCAAAGTGCCTCCGTTCCAGGACTGCATCCTCTGTTTTTTGGGTTTCTCAGATGAAGAGAAGGCCAACATGGAGGAGAGGACCCTCAAACACGGTGGCACTTATCTTGAGGTTAAAGATGAGAGGTGTACACACATGGTGGTGGAGGAAAACTTGGTAAAGGAGCTGCCATTTTCTCCCTCCAAGAAACTCTTTGTGGTCAAACAAGAGTGGTTCTGGGGAAGCATTCAGATGGACGCTCGGGCAGGAGAGTCCATGTACCTCTACGAGAAGAGCGACAGCCCAGCCATGAAGAAGGCAGTGTCCCTCCTGTCTCTCACCACCCCCAACAGTAACCGTAAGCGTCGCCGTCTCAGGGACACGCTGGCTCAGCTTACCAAGGAGACAGAGATCTCCCCTTTCCCTCCACCACGCAAAAGGCCGTCAGCAGAGCATTCCCTGTCAATGGGTTCTCTGCTGGACATATCTAATACCCCTGAGACATGCAAGGCCTTGGCAGAAGACAGAGTAGGGAACCATTCAGAGagcaaaggagaaaatactgtgACCAGGAATAGTATGAGAAGAAGGAAAACCAGGGAAAGGATGATTAGGACAGACGAGAGGAGGAAAAGGTCCTACCCTGGTACAAGTACTCTTCAACAaccagaggagcagcagcagcagctgctagTAACTTCTGCAGAGAGTTCAAAGCCATCCAAGAGTTCGACTCCGGTTCTGTCCAAGCAGTCAGCCAGGTGGCAGGTCTCGAAGGAGCTCTaccagactgagagaaactatgTGGACATTTTAAGCACCGTCCTACAgcttTTCAAGCTTCCATTGGAAAAAGAGGGGCAGGTGGGTGGACCCATCCTGGCCCAAGAAGAATTGAAGACAATATTTTGCAGCATTCCAGAAATCTATGAAGTTCACACTAGAATAAAGGGTGACCTTGAGGAGCTCTTGACAGACTGGTCAGAGGACAAGAGTGTAGGAGATATCATCCTCAAATATTCTAAAGAGCTGGTGAAGGCCTACCCACCCTTTGTCAACTTTTTTGAAATGAGCAAGGAAACAATTGTtcgttgtgaaaaacaaaagccTCGCTTCCATGCTTTTCTCAAGATCAACGAGGCCAAGCCAGAGTGTGGCAGGCAGACCCTGGTGGAGCTGCTGATCAGACCTGTACAGAGACTCCCCAGTGTGGCCCTTCTTCTTAACGACATAAAGAAGCATACGCCAGATGACAACCCAGACAAGATAACACTGGAGAAAGCAATTGATTCTCTGAAAGAAGTCATGACTCACATCAATGAGGACAAGAGGAAGACTGAAGGCCAGAAGCAGATCTTTGATGTTGTTTATGAAGTTGACGGCTGTCCTGCCAACTTGCTGTCTTCCCATCGCAGTCTGGTTTACAGAGTAGAAACAATAGCCCTGGGAGATCAGCCTTGTGACCGTGGAGAACATGTCACACTCTTCCTCTTCAATGACTGCCTTGAGATTGCAAGGAAGCGACACAAGGTGATCAGTACATTTAAGAGTCCACTGGGGCAGACGAGACCACCACCCCCGCTCAAACACATTGCACTGATGCCGCTGTCCCAGATTCGAAGAGTACTGGACCTGCAGGACACAGAGgAGTGTGTGAATGCATTCGCCTTGGTGGTTCGCCCTCCAACTGAACAGGAGAACTTGTTGTTCAGCTTCCAACTGGCTGGAGAGGAAATGGTTAAAAGCGTCTTGTTGCGAACACTTTGCCGCCATGTCGCCAACACCATCTGCAGGGCTGATGCGGAGGACCTAATTCAACGTACAGACCCAAATTCCCTACAGGTCAACACCAAGGATATGGACAGCACCCTAAGCAAAGCCTCCAGGGCCATCAAGAAGACCTCTAAAAAGGTGACGAGGGCGTTCTCTTTTACTAAGACCCCAAAACGTGTGATCCAGAGGGCGTTCATGGCCAACAGTACTCCAGATGAGAAAAGCCAGAGGCTGAGTTGTGAAAAACGCCTTGGCAGCAGCTCCACATTGGCTATGTCTCGCTCTGCCTCCACGTTCAGTTTGAGTGATTCTGCAAAGAGCAGTGCTGTGGTGCAGCGCTCTAACTCTCTGGACCATCCTCCTGTCAGGGCCAGGGTTCCTGTCTGTATACGTACCCCCTGCAGCCCAGCCCAAAACCCTGCCCATATCCCTGGCCCTGAGTTCAGCCAAAGCCTCTGCCCCAACTATTGCCCCAGCACCCAAGAACCCAAGTCCATACTTCATGCTCCATTAGTGTCCCAACCAGCACAAGCTCATTCAGGCCTCTACAATTCCCAACAGTCCACCTCTTCAACTCaacccacctccacctccattCCAGCTGTCCGAAACTCCGCTCAGCTCAACCCCAAAACCTCCCATCCAACATCTAGCCAGCATGTTTCCAGATACCTACCCTCTGTAGGGTTCCAGCCCAGGCTCCTGGCTCCTCAGCCGGTTAATGTCAAAGGCATGACCTTTTCTGAGTCATGCAGGGATCCTCAAGTCCCCTTGGAACCACGCAAGGCTGCCCTGAACAGTCCTCGCAGGGAGACTCTGCTCTAAACCATGGCTAAgttcagtcctggagtctgatGCACACCATTCCCCCTCCATGGTCAATCTGCCCTCCATGTTTGAGAGGAAGTACCACACATTCAGTCGTTCAACCACCCATCTCTTCTGAGACACTGCTGCTTGGGAGGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134683 lncRNA upstream 32226 32188408 ~ 32188807 (+) True G99907
XR_005640202.1 lncRNA upstream 192446 32021018 ~ 32028587 (+) True LOC120565210
TU134656 lncRNA upstream 357384 31863137 ~ 31863649 (+) True G99880
XR_005640203.1 lncRNA upstream 388578 31831741 ~ 31832455 (+) True LOC120565211
XR_005640201.1 lncRNA upstream 389320 31828785 ~ 31831713 (+) True LOC120565209
TU134768 lncRNA downstream 26621 32436847 ~ 32507210 (+) False nlgn1
TU134775 lncRNA downstream 182713 32592939 ~ 32593185 (+) True G99994
TU134794 lncRNA downstream 471454 32881680 ~ 32886149 (+) True G100013
TU134811 lncRNA downstream 668711 33078937 ~ 33079841 (+) True G100028
TU134826 lncRNA downstream 793954 33204180 ~ 33204746 (+) True G100043
XM_039810745.1 mRNA upstream 61588 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA upstream 61588 31783226 ~ 32159445 (+) False mcf2l2
XM_039810748.1 mRNA upstream 61588 31783226 ~ 32159445 (+) False mcf2l2
XM_039810751.1 mRNA upstream 61588 31783226 ~ 32159445 (+) False mcf2l2
XM_039810746.1 mRNA upstream 61588 31783226 ~ 32159445 (+) False mcf2l2
XM_039811895.1 mRNA downstream 26634 32436860 ~ 32878633 (+) True nlgn1
XM_039812233.1 mRNA downstream 832987 33243213 ~ 33762919 (+) True LOC120566032
XM_039812286.1 mRNA downstream 1362220 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA downstream 1362222 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA downstream 1362224 33772450 ~ 33875096 (+) False si:ch211-51h4.2
TU134550 other upstream 577587 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 589532 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 595237 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 1409797 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1791742 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 465156 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 857469 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 1464983 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2094417 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 3816861 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile