RNA id: XM_039811665.1


Basic Information

Item Value
RNA id XM_039811665.1
length 4300
RNA type mRNA
GC content 0.45
exon number 24
gene id ect2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 32221033 ~ 32411447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACTCTTGCCCAATCAGCGCGCTGCACCGTTGTTTGCCTTGCTTTTTGAATTAAGTTCGGGCAAATACCTACTCGGGACTACTGTTAAGCAGTTAGCTAGCTGTCAACAAGTAGCCACATTTCGACAATTTGGACTATTCACGCATAAAGGGCAACATGCATTGACACCAGACTTGCCATATAACGAAGAGATATTATAGATTTTTTGAGTGTTTTGGACCGAAGAGGAATTCTCGGGAATTCTTTATTGTATTGTTGACTTGAAgttactagctaacgttagctcggtaGCTAATTTAGTTAGAGAGCTTATTGAATGAAGTTAGCTCGCTCCCGTTTCTGTAATTCTTTGATATAGCTAGCTAAGTTACCAGCCACCGAAACAGTCGTTTGGACAATTTGGTGCCTCCACAAGTTCCTGGCATGGCTGACAGCAGCATAGTGACTCTAGGGACAGCTCGGAGTTTGCTGGATTCTTCGGTCTATGATTCGAAGATCGCCGAAACCACCAAGGACCATGTATTTATGGGGATGACATGTGAAGACGGGGAAGATATGCTGCCAAAAGTGGAGACAAGGGTTGTTCTTGTGGGAGAAGCAGGCAGAAATGGAGCGCTGGTCAAAGCATTGCAGGACATTAACATCCCTTGCATAATGACGGACAACGTCCAGGAGTTTGGAGATGGAGACAACGCTGATTTCGAGACGGTGTTCGTCCTCACAGACTTTGATTCTTCTGACTACAACTATCTCTACAAACACGACAACCGCATTGTTGGGCCTCCTGTTGTGCTACACTGTGCTGCGAAGGAGGAACCTCTACAATTTTCATGTCGTCCTCTCTACTCCACTACAATGCTTAACCTGTCGCTGTGTTTCACTGGCTTTAGGAACAAAGATGAAATGAAGAACTTGGTGAATCTGGTTCATCACATGGGTGGGACAATCCGGAAAGACTTCAGCACCAAGGTTACTCATCTCATCGCCTACTCCACTCATGGAGAGAAATACAGGCTGGCGGTGTGCATGGGGACGCCTATTCTCACTCCCTCATGGATTCATAGATCCTGGGAGAGAAGAGATGATGTGTACTTTCATGCAGGGGAAGAGGAGTTTCGAACAGAGTTCAAAGTGCCTCCGTTCCAGGACTGCATCCTCTGTTTTTTGGGTTTCTCAGATGAAGAGAAGGCCAACATGGAGGAGAGGACCCTCAAACACGGTGGCACTTATCTTGAGGTTAAAGATGAGAGGTGTACACACATGGTGGTGGAGGAAAACTTGGTAAAGGAGCTGCCATTTTCTCCCTCCAAGAAACTCTTTGTGGTCAAACAAGAGTGGTTCTGGGGAAGCATTCAGATGGACGCTCGGGCAGGAGAGTCCATGTACCTCTACGAGAAGAGCGACAGCCCAGCCATGAAGAAGGCAGTGTCCCTCCTGTCTCTCACCACCCCCAACAGTAACCGTAAGCGTCGCCGTCTCAGGGACACGCTGGCTCAGCTTACCAAGGAGACAGAGATCTCCCCTTTCCCTCCACCACGCAAAAGGCCGTCAGCAGAGCATTCCCTGTCAATGGGTTCTCTGCTGGACATATCTAATACCCCTGAGACATGCAAGGCCTTGGCAGAGAGTTCAAAGCCATCCAAGAGTTCGACTCCGGTTCTGTCCAAGCAGTCAGCCAGGTGGCAGGTCTCGAAGGAGCTCTaccagactgagagaaactatgTGGACATTTTAAGCACCGTCCTACAgcttTTCAAGCTTCCATTGGAAAAAGAGGGGCAGGTGGGTGGACCCATCCTGGCCCAAGAAGAATTGAAGACAATATTTTGCAGCATTCCAGAAATCTATGAAGTTCACACTAGAATAAAGGGTGACCTTGAGGAGCTCTTGACAGACTGGTCAGAGGACAAGAGTGTAGGAGATATCATCCTCAAATATTCTAAAGAGCTGGTGAAGGCCTACCCACCCTTTGTCAACTTTTTTGAAATGAGCAAGGAAACAATTGTtcgttgtgaaaaacaaaagccTCGCTTCCATGCTTTTCTCAAGATCAACGAGGCCAAGCCAGAGTGTGGCAGGCAGACCCTGGTGGAGCTGCTGATCAGACCTGTACAGAGACTCCCCAGTGTGGCCCTTCTTCTTAACGACATAAAGAAGCATACGCCAGATGACAACCCAGACAAGATAACACTGGAGAAAGCAATTGATTCTCTGAAAGAAGTCATGACTCACATCAATGAGGACAAGAGGAAGACTGAAGGCCAGAAGCAGATCTTTGATGTTGTTTATGAAGTTGACGGCTGTCCTGCCAACTTGCTGTCTTCCCATCGCAGTCTGGTTTACAGAGTAGAAACAATAGCCCTGGGAGATCAGCCTTGTGACCGTGGAGAACATGTCACACTCTTCCTCTTCAATGACTGCCTTGAGATTGCAAGGAAGCGACACAAGGTGATCAGTACATTTAAGAGTCCACTGGGGCAGACGAGACCACCACCCCCGCTCAAACACATTGCACTGATGCCGCTGTCCCAGATTCGAAGAGTACTGGACCTGCAGGACACAGAGgAGTGTGTGAATGCATTCGCCTTGGTGGTTCGCCCTCCAACTGAACAGGAGAACTTGTTGTTCAGCTTCCAACTGGCTGGAGAGGAAATGGTTAAAAGCGTCTTGTTGCGAACACTTTGCCGCCATGTCGCCAACACCATCTGCAGGGCTGATGCGGAGGACCTAATTCAACGTACAGACCCAAATTCCCTACAGGTCAACACCAAGGATATGGACAGCACCCTAAGCAAAGCCTCCAGGGCCATCAAGAAGACCTCTAAAAAGGTGACGAGGGCGTTCTCTTTTACTAAGACCCCAAAACGTGTGATCCAGAGGGCGTTCATGGCCAACAGTACTCCAGATGAGAAAAGCCAGAGGCTGAGTTGTGAAAAACGCCTTGGCAGCAGCTCCACATTGGCTGCACACCATTCCCCCTCCATGGTCAATCTGCCCTCCATGTTTGAGAGGAAGTACCACACATTCAGTCGTTCAACCACCCATCTCTTCTGAGACACTGCTGCTTGGGAGGGTGCAAAAAAGTAGAAGCTACCTGTATGGCTAACTAGCATTTGTCCATACTGGAGCTCATCACAGACTTTCCAAATCCATAAGGAAAATGGCATTGAAGGCACTGAAGAATTCAGAGTTGTTTAGCTACTGCTACAGTGCTTCACAACTGCAACTTCGGCCAAGAAGGGTTAAAACAATAAACCAATTGTTCATCAACCCGATGCCTACCATATGATGTATTCAGTTATGAATGTTCTGTGTTGCTGACAAGGCAGTTTGGTGCCTCTTTCCAAACATACACAATGCTTGAATTAAGACTAGAAGCTAACTGGAACGGTACTGCACCTTGCTAAGGGCTACATGTGTGTGATTACCACTGTAACATAAAGTTTGCCTTacccttaaaaaaaatgaaggatGCTCTGCTTTTTGTCTGCACTTGTTAATGGATTATATTGACATGCttgatttttttgttaatgTATTTCACCAGACACATTGTCACATGTTTATACCTTGCCTGTTCAGCTTCCTGGTTGGTTACCATTGTTGGCAGTGTTTAGTGAAGTGTTAACACTTAACTATTGACCAAGTAAACGTCTGTCATCTGGTTAAAATTGGAACGTTTTGCTGTCCTCAATTGCTAGTTTTATTTCACTGtgctttaaagaaataaaaatacttttaattgtACATGTTTAGCTATTTCTATTTAACAAATGCAGGTTGTTAAGCTCTTTATGAGTTTTATGTACTAGTTAAAGTTACAAGGTTGACCTCTCTTGCCCTTTACCATGTAACttttttaattatctttatacCTTATGACCTTTATATTAACTGACATTTAATGATGTTTTATTGTAGTGGGGTAGACTTAATTTCACCTGTAATATTACTCCTTGTAATCAACCCACCTTCAATATTTAAATATGAGTTTCCAGCTTTTATAAAGCTTCTATTGTGACATTTAAGAGAATCGGTTAGAAGAATAAAAGCTCTTATGTGCTGTTCCCTGTACGGCCATCCACATTTTAAAAgacgtttttacagtgtgtctaTTCCGtgcctgtgtatctgtgtgtatgtttaagaAGGAATGCTGCATCAGTGTACACATTTATTCTTGACAATACACTTTATTTAGCTATTTATGTTTTCCAGTTTTATCTCTTTTTCTCTAATGCTGTTTATTGAATTCAGTAGTCTCCTGTTTCATCTCTGTATTAAATACACTAAAACATG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000910 cytokinesis biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134683 lncRNA upstream 32230 32188408 ~ 32188807 (+) True G99907
XR_005640202.1 lncRNA upstream 192450 32021018 ~ 32028587 (+) True LOC120565210
TU134656 lncRNA upstream 357388 31863137 ~ 31863649 (+) True G99880
XR_005640203.1 lncRNA upstream 388582 31831741 ~ 31832455 (+) True LOC120565211
XR_005640201.1 lncRNA upstream 389324 31828785 ~ 31831713 (+) True LOC120565209
TU134768 lncRNA downstream 25400 32436847 ~ 32507210 (+) False nlgn1
TU134775 lncRNA downstream 181492 32592939 ~ 32593185 (+) True G99994
TU134794 lncRNA downstream 470233 32881680 ~ 32886149 (+) True G100013
TU134811 lncRNA downstream 667490 33078937 ~ 33079841 (+) True G100028
TU134826 lncRNA downstream 792733 33204180 ~ 33204746 (+) True G100043
XM_039810748.1 mRNA upstream 61592 31783226 ~ 32159445 (+) False mcf2l2
XM_039811895.1 mRNA downstream 25413 32436860 ~ 32878633 (+) True nlgn1
XM_039812233.1 mRNA downstream 831766 33243213 ~ 33762919 (+) True LOC120566032
XM_039812286.1 mRNA downstream 1360999 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA downstream 1361001 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA downstream 1361003 33772450 ~ 33875096 (+) False si:ch211-51h4.2
TU134550 other upstream 577591 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 589536 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 595241 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 1409801 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1791746 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 463935 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 856248 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 1463762 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2093196 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 3815640 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile