RNA id: XM_039811667.1


Basic Information

Item Value
RNA id XM_039811667.1
length 4217
RNA type mRNA
GC content 0.41
exon number 5
gene id zgc:77486
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25457253 ~ 25467003 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTCAGGAGACCAATCAGACGCAGGTGCCAATGCTTTGCACTATGGGATGCGGTTTCTATGGTAACCCCCGCACCAACGGCATGTGCTCGGTCTGCTACAAGGAACACCTGCAGAGACAACAGGGAGGGGGGCGATCCAGCCCGCCAGGAGAGAAAGCTGCTACATCACCGGCAGGATCGGCGGGCTCAGCTGGTGTGACTGTGGAGAGTACAACCTCAGAGCCCAGTACAGAGGTGGCAGGAACCCCACCTGAGGAACAAACGAGCAGTCCCAGCTCTCCCAGCCCAGTAACTCAACAGATGACAGCTATGAGCATCTCCCAGGATTCGGGAGCTGTGGACTCTGATCGAGCGGAGGCtgaggagggagaagaggagggTACTAGCAGCAGCTCAGAGCCAGTAGGGGAAGCAGCACAAGCTTTGTCTGATAATGACCAAACTCCagataaaaacaagaaaaagaaccGCTGCTTTTCTTGCCGGAAGAAAGTAGGCCTCACTGGTTTTGACTGTCGCTGCGGGAACCTCTTCTGTGCCATTCACCGTTACTCTGACAAACACGACTGTCCCTATGATTACCGGAGTGCAGCTGCTGCCCGCATACGCAAGGAGAACCCCATCGTGGTGGCTGAGAAAATTCAGAAGTTATGAGGACTgagtgcaaaaacaaaaacaagtctCTGACTTTGTGAATTTGAACAATGGCAACTTGGATGAAAACACCTGATATCATGGCTTCATTTGTTCATGGTAGACTAAGACGGGCGGGGTGGGGTGGTGAGGTTGCAGCCACTGTCCAGACGCTTCCCTTACTagcatctccctctctctccgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcacgcgcgcctgtgtgcgtttgtgtgtgtctgtctgtctgtctgtctttctcttgcTTGAGGGTCAGGGAGAGAGCCATAGGGGCCTGGTTGACATTAGTGTGGCTGTGGGAAGggaagacattttattttacccCTTTTTGTTTGGGGgagcgtgttttttttttttttttttttttaatacaatccCTGTAAGGCCGTTTGAAATGAGACAGGTAAGCTGTTGAGGAATGTGTCGCAGCCTGGTTAATGACACAGAGGTCAATTAAGAAGGTCtaacaagtttaaaaaaaaaaaaaaaaagaaaaaaaacctaacTGGGAGATTTCATGTATCAGCAAGACCTTTTTAAGGGCTTTtggaatataattttttttttttttttttccccgacTGAAAATGATGTCAACTTCTTGTCAAATTggcagattttttatttttttcccccttcccaCCTCCTCTTACCTTTTCTCTATTGGTCACCATATGTTGAACTCCCAAGTCTCAGCATTTTCCAGAAATGTTTCTCTTTGATATATTGACTTATCATACTGATATTGGGTGCATGAACAGTTATTGGACGGGAAAGGTAGGGGAGGGCAAGGGTAGGGGAAACTGAGAACCTTGACTTAACCGAGtgattgaattgtttttttctttttattttctttttttttctgttttaatgaGCGTATGACATCAGAAGATCTATATTAATATATTGTAGTTAGCTTGAATTGTGTGATTgcattctatttattttttatcgtTTGGTTGGTCTGTGCTGGAGGATTGGCAGCATGTGTCAGCAAATCATTAAGGTTTGCACTTAACCTTTTCAATTATATTTAGGTAATTCCATCTTGATTATATAACCATTGAATAAAAGATACACAAGCTCTGACATGATAGAGTAGGGTCCAGTTAAGCCGCAGTTACAGTTAAAATCGTGCAGCGAAATGTCCATAGTTTTGGATTTTGGAAACAAAGCACAACAAAGTGTGTCAACTGCAGAGCACAAAAATAATGTGCCACACCTACTCCGTTTTGTTCAGCATCTGGGTCATTTGCAGTTTATATTTGATCTGTATAGCAGGCTCGCTGAACAAATTGCCTGATTGATGAGACGTTCTGTGTTAGTAAGGCGCTGTGTTCTCCTTTTAATGCCCTTTTCTGTTCTATGGAGTCAGAGTGAAGCTCCCTGTTTCTCTAACCACCAGCAGACCACTGACACATGCTGAATGAAAACTGACCTGGGTCGCAGTGACACCTTCTGCTCTGCTAAAGTAAGGGTTGGCGCAATGCTACGGAGTTGCGTGCTGTGCTTTTTACAATGTGGTCAGATTCAGACGAGTCCTTGCTACGAAGATCGCCTCTAGCTAGCTTCTTCTAGGAAGATCAAGCTTACCTGCATGTGTGCAGTCAAACAAATGAGTTACTGTTTGGTAACCGACTGCATAGTTTGAAATGAAGCTGGAATGTTCCAAAAAAGCCACACAGCAGTAGCACAATGCATGGCTAGAACCCTAAGGTTCAAGTTAACAGgactctactttttttttttcttcttcttccaaatGTAAATACCATATGGCTCCTATTCATATAGTATAATCTTAATGTAGATTTTTGCCAAGTAATAAAGGTGGGGGACTAAGGCGAAGAATAGTACTATGTGTATAAAAGTGCTTTTCATAATTATCCCAAAAAATTACTGTGCCACAAATGGCactattttttcccccccatctTTTTATTTACAGGTTATTAACCACATCATCTGCCCACATAATGTCCAAAGTATGTTTAGTAGTTTGCTGTACCATGAGTATCTAAAGGCCATGTGGCTTCTATTCTACCATACTAGTCAGATTGTTAACAAGGCCCTTAAGCTTTACTTACATTGCGGAGTTACACAGTATCCTAGTCCATGTTTATATCCCGTTACTGAAGCCTTTTCATAGCTTAGCGAAAGTTAAAAAGGCCTCTTGTGAGGAGCAGGGGGGCATTTGAGGTTTCATCTTTTGATTATCAAAAGCTTTCCTTGTAAATGTTGCTTGATCTTGATCATATAATATTTATGAAAGAGCTGTAGAAAAGTTGCAAGGAATTTGTggggtgtgtgtttttaaaataagCCAATGCAGAATGTATTGGACATGAATGACTTTTTCCTTGCATACGCAGAATATCACGTTGGACCTGGTTGTGTTTAGTTCTGGCTCCTTTTATTGGAAAATTGGCCTTCATCGTAATTCCTGTTAAACTCCTAGTGTGGGTGATGGACGTGTAAATAGCTTTGTGACCAGGCGTGCCAACACCGAGAGTATTTACCCAGGATAAGTTGGGCATCTCAAGCCCCTGACTGTGATTTTAATTACCACTGGTGGAAACTTGAAATTCAGAAGGAGTTTAAATATTGTTGTATTCAGGTGGTTGGAGCAGCTCTGCAAGTTCGATGTTCCCTAAGGTGTATCTTATATATTCAGAGTATTCAAGCTTGCCTGCTGGGTTGACCGTTAACAAAATATTGTCACCTacaaaatgctttgtttttccTTTACAGATTGAAAGTCCTTTCAGAGTAAAAGTCCTTAACTGGGGATGATTGTTCAGGTGTGTAAACCGTGAGGATTTAACGGTCtacacacatttgttttctaTTGACTGCTCATATCAAACCCCCAACCCCCTATTTTCATAATAAACATGGGCAGTTTGAATGTAAACCACCATAATTCACATAATCAGCTGCAATGTCATTTATCAAACTACATGGCCCTGATATTGACTTTGTTTTTGGGCGAAAGCCCAATTTCCTTCCATGTGGTTTGGGACATTTGGATCACTTATTGTTTTGACTGTTTGTGATGAAGAACTTGGCACCAGCAATTAGGGCAACCAAACCGAAATAATCTAGATATTATCAGTAcatatactttattttttttcttccttctgtTGTGTTGCTTCTGTAGAGTTTTGATGTCTTCAATCCCATATTCAGCACAACCTTTCATAATCAATGTCTTCATCATGCGAGGGTTTTGATTGATAATGATGAACCTGTCAGTTGTGATGAGTCTGGTTTGAAATTCAGTTTTACTGCAGAAGTACAGACAAATGACGATGACTTGATTCATTCTGTCTTTTCGAGATGAGCTTGAGGGACAGCAAATGAAATCTACAATGTTGACAGAGCTGTTAGTTCTTGTTCCTTGGCACTCCAGTCCCCCAGAAACACCACcagatatctttttttttattttgtttttcgtTAAAGATTTAGGATTGTATGATGTGTAAGAGTAagtataaaacaataaattcacaaagtttattttaaatta

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132450 lncRNA upstream 200096 25253473 ~ 25258486 (+) True G98163
TU132401 lncRNA upstream 226182 25229382 ~ 25232400 (+) True G98123
TU132407 lncRNA upstream 266744 25191064 ~ 25191838 (+) True G98128
TU132293 lncRNA upstream 568206 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 582916 24837613 ~ 24875666 (+) True G98021
TU132466 lncRNA downstream 12345 25479348 ~ 25479604 (+) True G98177
TU132478 lncRNA downstream 44853 25511856 ~ 25512252 (+) True G98186
TU132480 lncRNA downstream 48047 25515050 ~ 25515742 (+) True G98188
XR_005640183.1 lncRNA downstream 53869 25520872 ~ 25521287 (+) True LOC120565050
TU132488 lncRNA downstream 91110 25558113 ~ 25560035 (+) True G98196
XM_039810770.1 mRNA upstream 1423 25444399 ~ 25457159 (+) False plin3
XM_039810767.1 mRNA upstream 1423 25444400 ~ 25457159 (+) False plin3
XM_039810768.1 mRNA upstream 1423 25444403 ~ 25457159 (+) False plin3
XM_039810769.1 mRNA upstream 1423 25448434 ~ 25457159 (+) True plin3
XM_039812468.1 mRNA upstream 230301 25219482 ~ 25228281 (+) True mpnd
XM_039811561.1 mRNA downstream 1396 25468399 ~ 25476235 (+) True abhd17ab
XM_039811164.1 mRNA downstream 134878 25601881 ~ 25613413 (+) True npl
XM_039811880.1 mRNA downstream 186859 25653862 ~ 25663704 (+) True sec22bb
XM_039811881.1 mRNA downstream 186859 25653862 ~ 25663704 (+) False sec22bb
XM_039810898.1 mRNA downstream 211533 25678536 ~ 25729476 (+) True notch2
TU132285 other upstream 584708 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 584708 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 674701 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1980764 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 2136673 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 65822 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 263255 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 524503 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1325684 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2560969 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile