RNA id: XM_039811668.1


Basic Information

Item Value
RNA id XM_039811668.1
length 3454
RNA type mRNA
GC content 0.45
exon number 13
gene id si:zfos-943e10.1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17236374 ~ 17255548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAgtgagggtaaaaaaaaagaagaagaagcagaagccaAACAAGAACGGTGGAGTCTGGCGTGGAACGTCGACCACTGGTTGAGGGAAGAATGCTTGAAAACAAGAGAGACAGGTTGAAAACTTTCCTCAGGAAGATCGACGAGAAGGCCATCGTCAGAATCAAGCATTTCATGAAAGAAAGCAGCTACCCAGTAGAGAGCAGTGGTGGCGGGCTGCCAGCCAAGGTGAAGAAAAGCAGGAGCAGCTCAAGCAATGGCAGTATCAAGAAGGTGAAGAGCAGGAAAGACCTGAGCATGGAGGCGTCCCAGCTCGACCTCCAGCAACCGCACAAAACCATCACCAGACAAGAAGCCATCAGGTCGCAGACATTTGATGACAGCAGAGGCTTTGAGAGGACGCAGGGCACTGGCACACAAAGCaGTTTCATGAAGCACAACAAGACATTCCACAAGTTGTTTCCAGAAATATCCGAGAGTGAAGACTTGATACATGCATACATCTGTGCCCTGCAGAAGGAAGTGCCCTACCATGGTCGACTGTACATCACTGACACCAATGCCTGTTTCTACTCCTCAGTTCTGCTCAAGGACACTAAGTTAGTTATTCCCGTTTCCTGCATCCACATAGTGAAGAAGCAGAACACAGCTTTACTGGTACCCAACGCCTTGTCGATTCGCACCACAGAAGGAGACAAGTACCTGTTTGTGTCGCTGCGGAACAGAGAATCATGTTATCAGCTGCTGCGTTCAGTATCTCCTCAGCTAGAGGATGGCAGCACAAATAGTAGCCCTATCTTCTCCTCGGCTGAGAACAGCTTCGATAAGAGCAAACTTGAGAACTCCAGCCAGTCCAGTCTGGACAACAGCTTGGACCAATTCGATGGCTCCGAGTCACAATCTTTACAGGACCAGCCTCCGCACAGACCACACAGAGAGGCAGTGCCTAATGGGAATGTCCCAGCTTTCAGGAACCTAAACATGCAGCAGAGTGACAGCTCATCCTTTGAGGAGCTGTCCGTATCAGGTGGATCGTGGGTTTGGAACGTAACAGAAAAGGCCAAATCCCTGCTGGTTCAGAGAGAGGCCAACACACTCAACACTCTACTCTTTATTTACTTGATTTTGgttgtgctgctgctgttgtcttCTGGCTACATTGGCTTACGTATCGTGGCCCTGGAGGAACAGCTGTCATCCCTAGGGGCGCTGTCTGAGTTCACTTTACAGAGCGGGTACCAAGACACATAACACTCAGCGACTGAAGGAGAGATTGGTTGACTCGTGTTCGGAGGATTACTTCAACCTCTTCCAGCAGGACGCAGCGGGAGAAATTGAATGTACTCAAGACTGTGCTCCCAACATGGCCTGTGCTGTCGGCTAGAGGAAAAATGGCCAACCTGTGCAATTTTAGAGGCAACTTGTTAACTTGAAGGGCTATACTTCCTCCTAGTAGACAAATGGACATGCCACGGTTTAGTCACACAGCCGAACCAAAATCCATACACACCCTGCCTGGTTGCAGCGTGTCTGTCGTCGAAAACCAAAGCCAAACGGCTCCGACTTAACAATGTTCCCCGCTGGCCAGGTTGACGGGCACTTTCCTGACAGAAACCGTTCCACATCTGTGAAGTCACGTTATCCATCGTCCTTCACACAGACTCCTCTCCCTGAGCATGCGGTCTGAAAACAGGGCTATACCAATCAGCGTTAGCCTGCTGTAGTGCTTATTATTGCACCTCAACACCAGAGACGTAGTGCTACGCATAACCAAAGACGCACACAGTGCACGTCTTTATAGCATGGGTGCACGgcgaggattttaaaatgactttCTATCTCTTATTTACCCATCCAACAGCGGGATTTACAAATCtgtcttttgtccttttttaaattctgtCGGGTACTGCTCTCCGAATGGTTCTTATCTTTCCAATCAGGTGTGTGTTGAAATGATGATAGCTGAAGCCTCAACATCAGATCAGCCCGTGGAGGCGCGATACTCTCCTGATGGTCTTAGCCTTTCTCTCTTTCGCCAATCGGCAGTGATTGCAGTGTTACTTTCCTCGTCTTTGGCGTGATTTAACCCCGTTGATGATCAATGTTCAGAGGTTATTTTCCCTGCAGTCTCCACTGTGGACGAATGCATCATCAATGCACAAATATGTGATACAATAGGACACGAGTAGGTTGTGTCAGAGGCATCAGTATGGCTTTTCTAGAGAGTCAGTTTCAGATGTCTGATGTACTGTCTACCAGTCCAGTCTGACCACGTTGTTACAAGTACgaacctctttctttctctgacaGGCCTCTTGAAGACCAAGTGGCATTTCTCAAATTTTCAGGTTATTTCAAGTAGCACCAATAATGTATTTCTAATGTTCATGAATGTGTCGATATCGACACTCCTGACTGATACTGTAAATGCGTTTCTCCCTCTTGTCACCTGAAGAGGAGAATTTGCAGCCCCGCTTGCTGTAAGGTCCCTCGTTTTCAACAGCAAAAACAAGTGGTCCCAAGACGAAATTTCAATATGCAACAAATTATTATGCATggcaaaatgtaatttatcttTGTGTGCCGTTTTTAAATGGAGCTTGGTGTTTGTGGGTAAGAAattgtgtaagaaaaaaaagcgAAAAAAACCCAGATTTGAGTGAAAGGAGCAGCTCAATCGAGCGAgcgcactttaaaaaaatgtgttgtgcCTGTCACAATCGGGACTGAGAAGAAATGTCAAAGCTGGCGTTTTGTGGTATCGGACGGTgctaagacctttttaaaaacaaattgttttCACTCAGGGGTGGTGGGCACTACCTGCCACATGGTTTATCTTTTACTTTGTCATTTCAAAGTCTCGTGCTAATGATGGGGTTCATGTTTTGTACATGTTGGCTTTGGTGATTTCTCAAATGTCCATTTGAGAAGGAACACTACTTTTCATTGAGATTCACTTGACTTTACTACTTAACTGTATTCAGCTCCTCAGAATGTTtcagccccccccccatttgacactttttaaaCTAACCTAACAATTCATATCCACGCCACATCTCAGTGACTTAACATCACTCTTGTTGTCGACGCTGTTCTTGACGAGGTGTAGCGATGGGGTTAACTTTTGCTACATCCTGTTTGAAGAGAGTCATATTCAGCAAAGGTTATCGTCAGCATGTCCTATACAGTACTGTCAGTTCTTCTAATCTCCCACCAGGGGGCAGCACACACATCCACTGTCCTTGAATGGACTCGCAATGCAAGAATCTCAATGACGAGGGCAGTATATGTGTGGTTTTGCACTATTCAAAGTGTTGTAAATAATTTTGTATCATGTCTTTAATTCTGCTATGGTCCTATTTGCATTCTGTGTAATTTAAAGTAGTCTCTGTGAGATGACTTTgctattgttaaaaaaaaaataaaataaaaatgttgcaaaGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129594 lncRNA upstream 358294 16877876 ~ 16878081 (+) True G96088
TU129592 lncRNA upstream 464205 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 559798 16676207 ~ 16676577 (+) True G96076
TU129581 lncRNA upstream 643193 16592876 ~ 16593182 (+) True G96075
TU129574 lncRNA upstream 732564 16503145 ~ 16503811 (+) True G96070
TU129700 lncRNA downstream 1845 17257393 ~ 17261030 (+) True G96160
TU129761 lncRNA downstream 167517 17423065 ~ 17423278 (+) True G96202
TU129778 lncRNA downstream 365250 17620798 ~ 17636711 (+) True LOC120564955
XR_005640171.1 lncRNA downstream 367436 17622984 ~ 17636720 (+) False LOC120564955
XR_005640170.1 lncRNA downstream 367436 17622984 ~ 17636720 (+) False LOC120564955
XM_039812487.1 mRNA upstream 18585 17206770 ~ 17217790 (+) True tbxa2r
XM_039811986.1 mRNA upstream 58490 16926621 ~ 17177885 (+) False ptprsa
XM_039812401.1 mRNA downstream 82277 17337825 ~ 17343420 (+) False ddx59
XM_039812402.1 mRNA downstream 82859 17338407 ~ 17343549 (+) True ddx59
XM_039812333.1 mRNA downstream 88617 17344165 ~ 17369090 (+) True kif14
XM_039811535.1 mRNA downstream 114554 17370102 ~ 17467510 (+) True LOC120565631
XM_039812403.1 mRNA downstream 493884 17749432 ~ 17753834 (+) True srek1ip1
XR_005640269.1 other upstream 895327 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2319769 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2322342 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2614962 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3853631 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 600089 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 611000 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 613118 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 616162 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 616730 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile