RNA id: XM_039811686.1


Basic Information

Item Value
RNA id XM_039811686.1
length 5781
RNA type mRNA
GC content 0.44
exon number 12
gene id celf5a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26522344 ~ 26724401 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAGTGCTTGCTCTCTCACAGTGAgcgtgttcgtgtgtgtgtgtgtgttgtcattaTTATCCACTCTGCTCCCAGCTCAGAATGGCCAGATTCACTCAGACTGAAACAAGAAGGCAGCACCATCCACAGCAGCTCCAGCCCGCTTACTCCAGCCTGGTTTTCACCGGACCGGGGGTACCACCGAGCCAACAACCACTACTACTTATCCCACATCAGCACCAGTACCCTCAGATCACATTTCCGAAACCCATGAACGGGTCAGAACCCATTTCAATTCATCCGGAGAGCGGCAACATGAAAGACCAAGATGCCATTAAGCTGTTTATCGGGCAGATACCGCGGAACTTGGAAGAAAAAGACCTGAAACCCCTGTTTGAACAGTTTGGGAAAATCCACGAACTGACAGTTCTCAAGGACCGATACACCGGCATGCACAAAGGTTGTGCATTCCTCACCTACTGCGCCCGAGAGTCGGCCATCAAagcccagaacgccctccatgAACAGAAAACACTGCCAGGGaTGACTCGCCCCATCCAGGTGAAACCGGCTGACAGCGAGAGCCGTGGAGAAGACAGGAAGTTGTTTGTTGGGATGCTGAACAAACAACAGACTGAGGAGGATGTTTACCGCCTCTTCGAACCCTACGGAGTCATCGAGGAGTGCACGGTCCTAAGAGGTCCTGACGGAAACAGCAAAGGTTGTGCCTTTGTCAAGTTCTCCACacatacagaggctcagtctgCAATCAGTGCCCTCCACGGTAGCCAGACCATGCCATTCTCTCTACCCCCTCAGGGTGCTTCCTCCAGCTTGGTGGTCAAGTTTGCCGACACAGACAAGGAGCGCACCATCAGACGTATGCAGCAGATGGTTGGGCAGTTTGGCATCTTCAACCCAGCCATCGCCCTTCCCTTCAGCACCTACAGCTCTTACGCACATGCGCTaatgcagcagcaggcagccatCATGGCAGCAAGCCACGGAGGTTACCTCACGCCAAGCGTGGCTTTTCCCGCCACACAGATCCACCAGATGGGGGCGCTCAACATCAACAGCCTCCCACCCACCACCATGACCCAGGTGTCGGGCCTCAGTTCTCCACCAGCCAACATCACCACCTCCGCCGTGCCCAGCATCGTCACGCCCATCGTCAACGGATTCACCGGCATCCCTCATCAGCCCAACGGACACCCTTCTGTGGAGACTTTGTACACCAACGGCCTGCCACCCTACTCCACCCAGAGCCCCACGGCTGCTGACACCCTCCAGCAAGCCTTCACTGGAGTACAGCAATACACAGCGATCTACCCAGCCACCACGCTGACTCCCATTGGCCAGACACTGCCCCAACCACCCCAGGtcatccagcagcagcagcagcagagagaaggtGAGGGTCCGGAGGGTTGTAACCTGTTCATCTACCACCTGCCACAGGAGTTTGGAGACAATGAACTCATGCAGATGTTTCTGCCCTTCGGCACCGTCATCTCCTCTAAGGTCTTCATGGATCGggcaaccaaccagagcaagtGCTTCGGTTTCGTGAGCTTCGACAACCCTGCTAGTGCACAGGCAGCTATTCAAGCCATGAATGGCTTTCAGATTGGGATGAAGAGGTTGAAAGTGCAGCTAAAGAGACCGAAGGATGCCAGCCGCCCTTACTGACACAGCCTGCCTTCAGTATTCATTGCAGCAGCACAGgttttaGAGGACACGTGAAGATATCTCGGAGgagttaaactttttttttttttttttttaaagcaaaaatatgttttaaaaaaatcaacacatAAGGAATCTTTCAAGACATATCAGCATTTACTTATGAAGATATAGATTACGGCAGAAAAAGAAGATGCGAAAAAGGAGGAGGCGCTTCACCGGGGGACTTAACAGTAACAGATGGCACAGTGCAAGAaagatgagaagaaaaaaaaaaactgaaaaaagatgTGATGAGACTGAACAACAGAACTTTTTCTTGTTGAGACTTGAATTGTTAATTAAGCaacaaactaacaaacaaaaaagcagcaacaacaaataGATTtctatatacatattatatacacatatatataaggaAAGAGGCGCTTGTGGCTTTTACTGTACTGGACAAATGAGGGTTAAAACTTGAAGATCaagaaaaacagtggaaaaaaagaagctattCTATTCGTCCACTGACagactttctttctctttccctctttctcttatTCTCTCACCGTCTCTCTCAGCAAGCGCAGAACTATGACTCTTGGAGGTTACAGAGGTTTCCATTAGCAACAGTAGAACTGCAAATCTTTCACCCCTAAGGGACCAAAGGAccaaacatttttattgttcTGAACAGTAATATATAGTATTAATGATACTAATACTAcaaactactactaataatattaCAAGTTAAACTTAAGAAGAAATACTAGcttcaggttgaaaaaaaaaaaaaaaaggaaatgggtTTTGGTTTCTTTTCCTTTTACATTTATAGCTACTGGGTTTAaggaatattaaaataaaacagaaaaaaaatgtataaagctATACTATTTTAGTGGCGTAGAATATGTGGGTTAGACATTGTTTCGGGCATGTTCAGATGTTCTTTTGCCACTCATTGCTTCATCTGCGTCACGCCATTTCATCTCGGAGGTGTCATCTGTCGGCGTCATTGTgtcagtagaagaagaaaacgAGTCCAGTAGTGCCAAAAAGTGACACAATAACAGCCTCTTAACGCAAACATCGCTGATCCACGGTGTATTTAGCCATGTGTCGCTGTCTTCTGCTCTTGTCGGCGCGTTTGCAATTCCATAATTGAAGCAAGAGTAATTCCATATCATTAAAGCCTTGATATTACAGATAATCTGACCATAAAGCACTGTGGTTCAAGTGCCGCCCGTCTGAGCTGGATACGCAGCAGTAAAACAGCACAGCATCTGTAACTGCTTAATAAAATATACAAATGAGCCTGACagcagttgtaaaaaaaaaaaaaattccatcgGCGTGTCACAGTGGTCCCTGCCGGGTCGTGCCCTCTCCCGCTGCCAAGCTCCTCCAGCTGTTCTCAGCAGGTGAGAGCACACTCCCTTCCTCTTTtgcctctcccccccccccctctctgtctctctctcctcacctCCAAGTGCCAGCATATCTCTCTCTTAATATGGACCATCAGTTCACGGGGGCCAAGAGCCAACCCACAGCATAAAAAGGATAATGATAATATTGATCTGATGGGGAGCGGCCCTGCAGGGCAGAGAGATGCGCAGTCAATTGCGCATTGGCATTTTGAATGAATTGACTGAGAGTGACAGAGTCCATTCCTCTCTCAGTGGTTGCATGGCAGTCTTTTCTCCCTCTAAGTACCATCCACAGTCTCAGAGGGGACCCTGAATCTGACAGAGGCCCTGTGGGACACGTCAAAGTCACTTAAATCTACTTCATTATCGCTAAAAAGTAAAAAGGTTGTGAGGGTTACGTGGCTGCGACAGGATCTGTATATAGTGTTTAGAGTAGATCGTACAAGTTCTTCAGTGAAGAGCagctgtattttttatttttttttctctccaaaggGTATAATAGCACAGTAAGAGCTTGTACACTGTGAGGAACAGCCTGGCATTACCAGCCTTAGGAGGTCAAATTAAGAGCAAAATGATCCATCAATTAGACAGCAGCAGGCCTGTAAGTGTAGCTgctacagctgctgctgcttcaaccAGACGACAGCTTACCATTAGCGCCGGTCACACATGGCTCCTATATACAGTGTGGTCACGACACATCTCGCTGTATCAGATATGATTAATTAACTAAACTAGCGTCATCTGTGGTGATGCTTTttacagagacacgcacacatacagtacatccgAGATGAAATCAGTTTTTCATGACTTGCTTTTACTGAGTCGccttatttgtttattttttttatccattaCATCCACTCAGTTGTCTTtgaatttgaaaatattttccaACATGTCCATTCATTGACTCAGTTTGCACTGAAGCAGCCTGCCCCTCAGGACTGTGTGTGACCTCAGCACTCTGATCATCGCTCTAAACTTTAGACACATTAGTGCTTCGGTCATCGAATCCCAATGCTGTCTCTATGGCCGCATCCACACATGAATGAGTCTTCAGCAAACTGTAGTCTGGAACGGAAAATGTCATCACCTTGACTGTATCTTTTGGTTTTTATTCTCTTTATTTGTATGATTACTGGTTCACAGGATCAGCATTAGTAGAAAGGGGACGTTTGATTTTTAGGAGACCATTAATGTTGCTCCCCTCGTTCACTGTACATTGTTCTCTTGCAGGCAATACTTAGATGCTGTAAAAAGAAAGTCTTTAAAAATGCCTTTTCTCATCATGAATTGCCAAATTATGCAAGCATATCCACTGCATTTCCTCATCAGACGTCAAACGTGCCAGATTCCTCGAAAATTTAAGATATGAATATGTGTTAATTTTCATGTCAAGTATTGATCAGTGAGGAAAAGTATTTGATTTTGTGATACAGCATAACATTTTAGGAGGAAGGTCCTTTCAGGCTGTAATGGTATTCAATAGGGTTTTCCAGTGAAAAGGTTAGATTTCACATGTATTTGCCAGAAGACAGTTTTTCCCCCTGGTGAGTTACTGTTACTGAGTTTCCTTTCTGCTGTCAGGGCCCGGCAGCTTTAGGACGCTGTGATATATGCCCTCCTTTCCCCAGGCCATACAGGGCCTTATAAACCTACTCAAAAGTCTTTTCTCATGGGATTTATACTGGAgaggttttgttttaaattattaaaatcaaattaaatttgGCCTTCACAACAGCTTGGGTAATGCACATTAAAGATGCCAGCTGTGGCTGAAATTTAATGAGTTTGAAAAAGATGTCGAGTTAATTTCATTCggccaaaagaaagaaatgaaattTGATTGAACTCAATTAAAAGGTTTGTGCATGGAGACAGTTTGTATGTGGTGCATAAGCAAACATATCTGTTATGAAATTCAGAAAAGGGAAAGTAATGAGTTgacatttttgaatgaccaAACTGACTAAAAAACCcactaaaaagaagaaaaaaaaggaaaagcagtAATGATTCCAAATAGTGTTATAATTTAGCTGCATGTGGTCAAACTAAAGTTTACTTTCTACATTGTTTTCACTCTTgcatacttttaaaaaaaaatcatgtttgtCTTATATTTGTCATCCCATGGTGCCCTTTCAATCTCTGAGCATGCTCAATaggggctggggggggggggtttaaagATTATGGTACTACTAGTATTAACAATATGATTCTTTAACTATGGTTTGAATGCTAAGGAGAGTAGCTTATTATAAATATGAAATCTGTATATTGTGGAAAATCAGCACAGGGCCTTTCTTTGGGTACATATAGATTAGGGTTTGAAATGGGGGAGTGGGAGGGGGTGGGTCGCTTTATAAAGATGTTAACTTTCTGGTTTCTCAGCACAAAGcatacaaaaacatagaaacagCAGTATGGAGTCTGTGATGAAGACTTTACTGACATGCAGGGTGCAAAAAGAAGAATCTCAGTACTATTCTTTAAACCTGGAAGAGAAAATGCAGTTTACAGGTGGTAtggtttttctttcttcttttttttttttttaaaggagagTGCCACCTGTTTTTGTGGCTGCGTCAGTACAGCATGGATTCACTGACAGGGAAAGCAGtatctttttataaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132926 lncRNA upstream 10817 26511184 ~ 26511527 (+) True G98500
TU132919 lncRNA upstream 24083 26498032 ~ 26498261 (+) True G98494
TU132817 lncRNA upstream 180051 26339571 ~ 26342293 (+) False LOC120565098
TU132812 lncRNA upstream 180140 26339571 ~ 26342204 (+) False LOC120565098
TU133001 lncRNA downstream 146943 26871344 ~ 26871564 (+) True G98546
TU133007 lncRNA downstream 216511 26940912 ~ 26949064 (+) True G98552
TU132991 lncRNA downstream 268497 26992898 ~ 26994055 (+) True G98544
TU132993 lncRNA downstream 273286 26997687 ~ 26998445 (+) False G98544
TU132998 lncRNA downstream 288905 27013306 ~ 27016187 (+) True G98545
XM_039810466.1 mRNA upstream 142400 26350599 ~ 26379944 (+) True si:dkey-110c1.10
XM_039810482.1 mRNA upstream 171917 26343721 ~ 26350427 (+) False mbd3b
XM_039810483.1 mRNA upstream 171919 26343719 ~ 26350425 (+) False mbd3b
XM_039810192.1 mRNA downstream 67328 26791729 ~ 26796287 (+) True micos13
XM_039811361.1 mRNA downstream 153907 26878308 ~ 26935883 (+) True polrmt
XM_039811282.1 mRNA downstream 365822 27090223 ~ 27100256 (+) True atp5f1d
XM_039811509.1 mRNA downstream 396297 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA downstream 396298 27120699 ~ 27147156 (+) True midn
XR_005640198.1 other upstream 502973 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 790167 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 975255 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1648470 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 68286 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1303571 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1412868 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2047987 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2939232 29663633 ~ 29665090 (+) True G99297