RNA id: XM_039811720.1


Basic Information

Item Value
RNA id XM_039811720.1
length 2021
RNA type mRNA
GC content 0.48
exon number 13
gene id agbl4
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22816551 ~ 23246315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGCCGTGGTAACACACTTGGAGCGTCGGTtgctctgtaacaggatggaaAGGAAGATGGAGGAGAGTACTGTTAGAGACGTCGAGACTGGCAGtgacactggaggagaggatGCCTTGGTGGGAAATGTGAACAAACTGATGGTGAGCCCACCAGGTTATTCAGGAGCTTCGCGAAAAGGACATCTGGTTTTTGATGCGTGCTTTGAGAGTGGGAACCTTGGCCGtgttgactacatcagtgagttTGAGTTTGACCTCTTCATCCGGCCTGACACCTGCAACCCCCGCTTCAGAGTCTGGTTTAACTTCACAGTGGAGAATGTCCGGGAGACACAGAGAGTCATTTTCAATGTGGTCAACTTCTCCAAGACCAAGAGCCTGTACAGAGATGGCATGTCTCCCGTAGTCAAGTCTACCAGCAGGCCAAAATGGCAGAGGCTTCCTGCCAAAAACGTGTACTACTACCGTTGTCCTGACCACCGGCGCAACTATGTCATGTCCTTTGCCTTCTGTTTCGACCAAGAGGACGATGTATACCAGTTTGCCTACTGCTATCCCTACACCTACTCCAGACTGCAGCACTACCTGGCAAGCCTGGAGCGCAGGAACCTGCCCTACCTGCAGAGGGAGCAACTGGGTCTCAGTGTGCAACAACGGCGTCTAGACCTGTTAACCATCACCAACTCTGACCATCTGAAtccagagagggagaaaaagctGGTCTTTCTTTCAGCTCGTGTTCACCCTGGAGAGTCTCCTGCCTCCTTTATTTGTCAAGgTGTGATCGACTTCCTGGTGAGCCAGCATCCTGTGGCTCAGATCCTAAGAGATCATGTGATCTTCAAGATCGTCCCCATGCTAAATCCTGATGGAGTCTACCTGGGCAACTACAGGTGTTCTCCGATGGGTTTCGACCTGAATCGCCACTGGCAGGATCCCTCTCCATGGGCCCACCCCACGTTGCACGCTGTCAAACAACTCATAGTTCAGATGAACCAAGACCCGAGAGTTAGTTTGGAGTTCTACATTGATGTCCATGCCCACTCCACCATGCTGAATGGCTTCATGTACGGCAATGTGTTCGAGGACGAGGAGCGCGTCCAGAGACAAGCTGTCTTCCCTAGACTGTTGTGCCAAAATGCACCAGACTTCTCCTTTTCTAACACGTCCTTTAACCGGGACGTGGTGAAGGCCGGTACCGGTAGACGGTTCCTCGGTGGTCTGCTTGATGACACATCCTACTGCTACACTCTAGAGGTGTCCTTCTACAGCTACATGACGGCTGGCAGCACCGCTCCTGTGCCATACACTGAGGAGACATACACGAAGCTGGGCAGGAATGTGGCTCGGACTTTCCTGGATTATTACAAACTCAACAACCTCATCAAGGACAACAGACCTATTCACATTCAAAGTTCTGAGGTGATGTCCCAGACAAGCAACGTTAACAGAAAGGGCAATGGTTTTGGCAGAGACGCAGCAGacaaagagaaggagaagagcATGGGTATCAGGCATTAGACAAACAGACatacggacagacagacacagactgagCATGTATAAAACACAAAGCACCGTCGCAAGAGGATCCTTCACACTTCATTGCCTTTAAAAGCTCTACATCTCCCTGGCTATAAAGACTTATTTTCACAGATTTGTAACAGTGGGATGACTGGTACTTGCAGGACTAAAATCAGAACAAGCTTCCTCTTGGGTTATTTAGTGACTTTAAAATGTGGACTATTGAATGCTAAGGGAAGACAGACGGGTTCTACCCATCTAGTCCACCTGAGGCCTTTAATCAGCAGCTCCTATTTGTTGTTTATACAATTGTAAATAAATGCATGCTTCCTTGCTGTTACTGACATATTATCTCTGTTGGTATTAGAATTAGTCATTAAACACTTAATCACATTACAATGCTGTACCTGTTGCTCTCTTATATGAATACTGATTAATTATTGTTTGATTTATAAAAATGAGACCTACAGTATATAAAGAACATTCTGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131554 lncRNA upstream 33984 22914516 ~ 22918731 (+) True G97489
TU131548 lncRNA upstream 82267 22865827 ~ 22870448 (+) True G97485
XR_005640278.1 lncRNA upstream 152570 22780607 ~ 22800145 (+) True LOC120565733
TU131455 lncRNA upstream 153043 22780774 ~ 22799672 (+) False LOC120565733
TU131444 lncRNA upstream 276537 22657499 ~ 22676178 (+) True rnf11b
TU131560 lncRNA downstream 35359 23281674 ~ 23282671 (+) False spata6
TU131568 lncRNA downstream 54529 23300844 ~ 23303691 (+) False LOC120565086
TU131626 lncRNA downstream 76642 23322957 ~ 23323328 (+) False pole4
TU131627 lncRNA downstream 76642 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA downstream 76774 23323089 ~ 23323484 (+) False pole4
XM_039810236.1 mRNA upstream 174524 22775008 ~ 22778191 (+) True dmrta2
XM_039811742.1 mRNA upstream 188627 22698080 ~ 22764088 (+) True faf1
XM_039812087.1 mRNA upstream 279026 22657480 ~ 22673689 (+) False rnf11b
XM_039812084.1 mRNA upstream 295689 22625085 ~ 22657026 (+) True ttc39a
XM_039811740.1 mRNA downstream 2814 23249129 ~ 23260156 (+) False spata6
XM_039811738.1 mRNA downstream 2815 23249130 ~ 23281836 (+) False spata6
XM_039811736.1 mRNA downstream 2816 23249131 ~ 23281836 (+) True spata6
XM_039811737.1 mRNA downstream 2817 23249132 ~ 23281836 (+) False spata6
XM_039811739.1 mRNA downstream 3735 23250050 ~ 23281836 (+) False spata6
XR_005640351.1 other upstream 376513 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 377567 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 377791 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 378043 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 379023 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 75207 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 228467 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1535603 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1605986 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1621702 24868017 ~ 24873874 (+) False elovl1b

Expression Profile