RNA id: XM_039811751.1


Basic Information

Item Value
RNA id XM_039811751.1
length 3794
RNA type mRNA
GC content 0.50
exon number 15
gene id si:ch211-129c21.1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28146653 ~ 28169655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGCAGGAATCAGACGCGGCGTGAACGTTACAGGTGTAGGACAGAGCGCCGAGCCGGGATCCCaggcagacaaaaaaaaatacagcagcAGTCTCAACGGTTTCTCATGTAGATCCTGAAAACTCCTGCTGTAGAGCTCAACCTACAGCCCCACCCCCGCACCACCacaaccccccaacccccacgccaccccccaccctcacaGCCTGAGGGGGGAAAGGATGCAAGACATCGGTGCTCTGACAACAGATGAGCAGTCCTGTACATGCAGCAGCTCGTCCCGCTGTGTCAAGTAACAACAAGATATGTCCATCAAGATGATCTCCTCCAGTATTCATCACCAGTAGCTGGGCAGCATGGCTTCTGCTCCTCCTTCAAGAGAGGACACCAGTAGCTCATTAGCACTGCGCTGGAGGCTAACGCCGACATAGATACACAACCCGCAAGACACCGACTTCAAACTGAACCGAAATCAGGCTGAGCTGCACCCTCCCCCCACAGACCTGGTTAAACATACTTATGAACTGCCTTCAGAGGATGACTTGTGCCAGAGTGGCACATGTCCAGGACAGTGACATCACCACAGTGTGACAGCGGCAACATCTGTACTGAAACCTTGGACCATGTTCTGTCTCTGATCGGGTGCTTTGGTGGCAGAGCTGGACTGTGCAGCTCTTCCGCACTTAGACAAACCTGGACTCTGAGCCATGTCTTTTCTCTCAGCCCTGAGCATCGTCTGTGGATTGATGCTTCATGTTTCATTTAGTGCACTCAACACTCACTACTGTGTCCCACGAAAGACCGTCCCCTACCAGAACGAGCTGAAGTTGTTCAAAGAAGAGGGGATCTTCAACTACTCCACCATGCTAATGAGAGACGACTTGggtgtgctgctgctgggggCCAGAGAAGCCGTATATGCTCTGGACATCGACAACGTATCGGTCAAAAAGGCTGCGGTGTATTGGCGAGTTACCGAGGAGAAGCAGAGGGAGTGCTGGTACAAAGGAAAACATGCTGAGGTGGAATGCCGCAACTACATTCGAACCCTGCACAAAGTGAATGACACCacaatgtttgtgtgtggcacAAATGCTTTTAGCCCCTCCTGTGATTATATGACATTTGTTAATGGACAGCTGAGGCTGGAGGGAAAGCAGGAGGAGGGAAAGGGGAAGTGTCCTTTTGATCCCTTCCAGAGATACTCCTCCCTCATGGTTGGAAATGACCTGTATTCTGCTACATCCATCAACTTCTTGGGCTCTGAGCCGGTGGTTCTGCGCAGCTCAGACTTGGCTCTCCGCACTGCGTTTAAGAGCTCCTGGCTCAGTGAGCCAAACTTTGTCTACATGGACTTTGTGGGTGAGAGTTTTGGTAGTCcggatggtgatgatgataagGTGTACATGTTCTTCAGCGAGAATGCCATGGAGTACGACTTCTACAGCAAAGTTGCAGTGTCCCGAGTGGCCCGTGTCTGCAAGgGGGATATGGGCGGCCAGCGGACACTGCAGAGGAAATGGACGTCGTTCCTGAAAGCTCGTCTGGATTGTTCCCTCCCTGAACCCAGCCTGCCCCCCATTGTCCAGGATGTCTTCCTGCTTAAGGACGACGACTGGAGGAAGAGCGTCTTCTACGCTGTCTTCACTCCGCAGTCGAGCTTGTCCCAAGTCTCTGCAGTATGTGCATATAGTGTGTCGGCCATTCGAGATATTTTTAATGAGGGCAAGTTTAAGACACCCGTCGCTGTGGAGACATCTCACGTCAAGTGGGTGATGTAcactggagaggtgccagtccCCAGACCAGGAGCGTGCATCAATAGTGTGGCACGTCAAATGGGTATGAATCGCTCTCTGGACCTTCCAGACAAAACCCTCCAGTTCATTAGGGACCGCCCCCTTATGGACGAGGCTGTTCGCCCGCTGACGGGAGGGCCGCTTCTGCTCAAGAGGGGAGCTTTGCTGACTCGGATTGTCGTGGACAATGTGTTGGCGctggacagacagagatacgCCGTCATGTTCATTGGCACAGAAAACGGTTACGTTCAGAAGGCTGTCAGCTACGCTGGAGAGATGTTCATCATTGAGGAAATTCAACTGTATGAAAACCCAGTTGCTATTAGCATTCTGCGCCTCTCATCCAGCAAGGGCCAACTGTATGCAGGATCAGAGTTCGGTGCTATCCAGATGCCGGTCAGTAACTGCAGCCGCTACGACACCTGTGTGGACTGCATCCTGGCCAGGGATCCTTACTGTGCCTGGGACCTTGACACCCAGCAGTGCTCCTCAGTCTACAGCTTATCACCCCCCTCAAGTAATGCAATACAGAGTCTGAAGGAGGGAAACGTCGCACAATGTCCCCAGCCAGatccaGTAGCAGCTGTGGACGTTACCCTAGTTCCAGAAAACAATATCCAGCTGCCTTGCCAGCTCCACTCCAACTTGGCGCAGGTCCTGTGGCGATTCTCTGACCAAACACTTCACTCCAACAACAAATACTATATCTACAGCGGGGGCCTCCTCATCCTGAGTGCCTCTGAATCGGACGCTGGCCTGTACACCTGTGACTCGGTAGAGCTGATCAACGGCAGAGCATACAACCGGACTGCGGCGGTTTATCAATTACAGCTCTACTCTGGGGCTGGAGCGGGGGACCACACTACTCCTGGCAATCAGGTGACAAATTCCACAAACTCTATTCACAGTCTGACTACAGCTACACCAGGGCTGGTACCTCTGCCAGACGTGGTCAGCGAGGACCCGTTGTCTCCCGAGAGCCTAAGCAACACTAGCAGGGTAACTAATTTAGAGGTGGCGGTGGCTCTGCTCTCGCTGCTTTGTATCTCCCTGATGGGGGTCTTATTTTGGGTCTGGAGTCAGGGACGATGGGGATGCTTCAAGTTTGCGCAGCGCCCCAGTGAAAGCGAGCGGAAAAGGCAGTCAGCCGAATACATGCACATCCCGAATAGAACTTCAGAGATTAAGCTCCTGGGGCCTGAGTCTGGAAGACCTTGCAGTGCCAATAATAATCACTCTGCTGTTGACTTCAAAGGGAACGGGGAGCACCACTTCACACCTATGGCCAACATTTCAAGTCTGGACGGGCTGGGATACATAAATGATGAGTCAGAGATTTGACTCTGCTGAGGTATAGAATTCAGCCAAAGGCCTACAACAGTGCACTAATTATCTTCCTATAGATGTGCTGCTGTAGAAAAGGTCTTCACATTATAAATTCTTTTGATTGGCGTCATGTTTCTCCTTGCCAATTTCCTCCACTGTCTATCATTTCTGTTCtctggatgatgatgatgagactTATCAGGATTTCTGGTGGAATTTCACTCCAGGAATTAGTtgaaaagtcattttttttatatactgtatgtattttttgtacAATCATATACACTGTGTAATATATTGTGTACAGGTAAGAGCTTTTTTTTCCAACTACTATTTATTATGAACAAAGTTTTTATTTCAGCAATCATACTACTGTAAATAAGATCTTGTAAATAGTGTCAGCAACAGTGAACAAGTAGCAAACACTTTGACCTCTAATTTACAGGCAGATTTCATTTTATGGACTGTTTTATTCAAGACAACATTCATCAGCCAGAGAGCATACTGTCCGGTCTTTGGCTGTGGGGGTAATGATtgactcttttcggccggatgtccatcaccttccactttctttgtgttggaattctaaactccggtggatttatgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 264345 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 287533 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 297718 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 313834 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 486595 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 142939 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 279888 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 287338 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 287338 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 399993 28569648 ~ 28570858 (+) True G99007
XM_039810104.1 mRNA upstream 331 28137269 ~ 28146325 (+) False LOC120564865
XM_039810323.1 mRNA downstream 9813 28179468 ~ 28192130 (+) True chaf1a
XM_039810330.1 mRNA downstream 35837 28205492 ~ 28218081 (+) False uap1
XM_039810327.1 mRNA downstream 35838 28205493 ~ 28218081 (+) True uap1
XM_039810329.1 mRNA downstream 35843 28205498 ~ 28218081 (+) False uap1
XM_039810328.1 mRNA downstream 36242 28205897 ~ 28218081 (+) False uap1
XR_005640167.1 other upstream 331 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 62269 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1350917 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2127285 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2414479 25730258 ~ 25732177 (+) False slc35a3a
TU133723 other downstream 602733 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1493978 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2257848 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2640863 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3453043 31622698 ~ 31625796 (+) True G99791

Expression Profile