RNA id: XR_005640282.1


Basic Information

Item Value
RNA id XR_005640282.1
length 960
RNA type transcript
GC content 0.52
exon number 13
gene id LOC120565764
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22485511 ~ 22491235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatgttattattgtgATCTTGTTCTCAGGGCCTAAGCGGTTTGGATGGGTTACTAGGGGTTGAGGGTAATGAAGGAGATCCGGGTGATATTGGTTTCAGAGGAGCTCCTGGAACACCTGGCAGGCCTGGCAAAATGGGAAACCCTGGATCCCCTGGGATCAGTGGGAACACTGGAGCACAAGGGTTCAAGGGTAAAGCTGGACCAAAAGGAAAAGGACCACCTGGACCAATGGGGCCAAAGGGTATTCCAGGACTGAGAGGAGAGAAGGGCGAGTCTGCAATTAATGGTCCAAAGGGTCTCCTTGGTGACATGGGAACACCAGGACCAATCGGACCACCTGGGCTAAAGGGGAATCCTGGTTTGCAGGGCCTGAAAGGCCAAAGAGGTCATAAGGGAAAGCAGGGGGATACTGGTCCTCCTGGGCCAAGGGGGCGAAAAGGCTTTCTTGGACTCACCGGTCAGCTTGGAAAGAAGGGAATGAAAGGTGTCCAAGGCAGGAGAGGACCAAAGGGAGTGAAGGGCAAGCATGGACATCCAGGAAAACCAGGTGCACCAGGCAAGCGCAGGCATACACAAAGGCAGGGATCAGGCCCTGAGCCAAAACCAGGTCAAGGAAATGAGCTAAGGCCAAAAACAAGACCCAGTACAAgatcaaaactgaaaaatgtgcCAAGATCAAGACAAACACCCAGCCTCCTGAAGCTAAGGGAAGGACAACAAAAAGTTGTGGCCCAGGCCAGTGTCCAGGAGATGGTCTGAAGTAGATGAGGCTGAGGAATCCTTCAGCTGGCCGCAGGGAACTAAAGACGATCCTGCCACCACCTGCTACGAGCTGGGACTCTTACACCCACATCTGAATGATGGTTACTTTTACATGGACCCCAACCAAGGCTGTCCCTATGATGCTGTGAAGGTATTCTGTAACTTCACAGCAGGAGGAACAACCTGCATTGACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 162656 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 169153 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 311118 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 327553 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 392137 22091389 ~ 22093374 (+) True G97263
TU131429 lncRNA downstream 83651 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA downstream 83692 22571795 ~ 22576548 (+) True LOC120566218
TU131439 lncRNA downstream 106393 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 106684 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 169396 22657499 ~ 22676178 (+) True rnf11b
XM_039810184.1 mRNA upstream 351 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039810182.1 mRNA upstream 31514 22360531 ~ 22453997 (+) True LOC120564914
XM_039812025.1 mRNA upstream 226400 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA upstream 226400 22229406 ~ 22259111 (+) True acbd6
XM_039812015.1 mRNA upstream 331178 22134681 ~ 22154333 (+) True sin3b
XM_039812090.1 mRNA downstream 4854 22492957 ~ 22501015 (+) True soat1
XM_039812089.1 mRNA downstream 4854 22492957 ~ 22501015 (+) False soat1
XM_039812091.1 mRNA downstream 13445 22501548 ~ 22529009 (+) True abl2
XM_039812093.1 mRNA downstream 13445 22501548 ~ 22529009 (+) False abl2
XM_039812092.1 mRNA downstream 13445 22501548 ~ 22529009 (+) False abl2
TU131315 other upstream 198239 22283646 ~ 22287272 (+) True G97321
TU131036 other upstream 703511 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2953834 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3699875 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4613100 17872278 ~ 17872411 (+) True LOC120566214
XR_005640308.1 other downstream 4854 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 83956 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 84366 22572469 ~ 22572551 (+) True LOC120566227
XR_005640356.1 other downstream 84620 22572723 ~ 22572804 (+) True LOC120566222
XR_005640353.1 other downstream 85064 22573167 ~ 22573247 (+) True LOC120566219

Expression Profile