RNA id: XM_039811778.1


Basic Information

Item Value
RNA id XM_039811778.1
length 1110
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120565765
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21997919 ~ 22000097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGTCGATATACGGTGTTTTTTCAACTTTTCTGTCGTCTTACAAGCTGTCAACTTATCAAACGAGATAATGAAGAAGACATCCAACTTCTTTCCCGGAAAGACTAAGGTGTCTTTCAGGAAGGGTCCATCAGGCCATCTGCGGCAGGATCCCTCTGACGAGGCCATGCGGATCAAAAAGAACCCTTCTCTTCAGGACAAGTCTCCCCCTCAGAGACATGACCTTGTGAAGACCAATGCTCTCACTGTGGTCTTTGAGCGGGGAGGGGATGTGTCTGACCGACTGGAGGTGATGGGGAAGTATGTGCTGCAGTTTGGCAAGTACAAGGGTAAATTGTTTAGGTGGCTCCTGGAAAACGATGTTGGCTACACCGTCTACCTGATGAAAaaggtagaggaggaggagagagatggtaCCTTCAACCCTCAGGGACACAACAAGGACAGCCTGCTGTCATTTCTGGACTATGCCAGGAGCTTCCAGGAAATTAGGGACCTCAGGGAGTATCTAGCTTCCAGGCTGCCTGCACCACCAGTGGCATCAGAGGGTGACAATACTGTCGGCTTTGGAGCCAGGGCAAACGACACCTGGAGACAGATCTGGGAGAGCAGGGCAGATGGATATGCTGCCTTCATCGTAGGAGTAAAGTGCATCAAAAACAGCAAGATGTACAACCTGCAGCAGTACATCCTCAAGCAGCAGAGGGCTGAGTCTGGGGAGTCCTGCCCACCACCTGCAGGAGTCTCCACTACATCAGCTGCCCCTACACCGCCTACATCTAGCACTCTAGCGATGGAGGAAGACGAGGAGTTGGAGAGTGGGATGCTGAATCTGTCTCCCTGTAAATTTGCCACTGAACTAAggccagcagcagcagtctccAGAGCCCCGGCTGTGTCTCCACCAACAGGTTTTTCTCCATCAGTGTAGAGGGAGGATTCTGTTCTCAGCAGAGTCCTCCTGCTATTACTGTTCTCCTTCAACTAGTTTGTTATTTTGGCCGTGTTCAGGCCTGTTCTGATGCTTGTGTTCTCTTACTCTCCCACTAACCTAAGGAATTAACATGTCAGCGATAATGgtaagtgttttctttttttttgcatgcttTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131148 lncRNA upstream 176 21997413 ~ 21997743 (+) True G97181
TU131132 lncRNA upstream 53358 21942965 ~ 21944561 (+) False G97170
TU131135 lncRNA upstream 53358 21944082 ~ 21944561 (+) False G97170
TU131133 lncRNA upstream 55515 21941105 ~ 21942404 (+) True G97170
TU131039 lncRNA upstream 253238 21743413 ~ 21744681 (+) True G97096
XR_005640290.1 lncRNA downstream 5678 22005775 ~ 22007353 (+) True LOC120565815
TU131159 lncRNA downstream 33700 22033797 ~ 22035674 (+) True G97190
TU131249 lncRNA downstream 91292 22091389 ~ 22093374 (+) True G97263
TU131286 lncRNA downstream 156014 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 157960 22158057 ~ 22174393 (+) True G97297
XM_039811631.1 mRNA upstream 18361 21967192 ~ 21979558 (+) True LOC120565695
XM_039811911.1 mRNA upstream 35371 21946176 ~ 21962548 (+) False tnfaip8l1
XM_039811910.1 mRNA upstream 35371 21946181 ~ 21962548 (+) True tnfaip8l1
XM_039810503.1 mRNA upstream 88721 21895470 ~ 21909198 (+) False ncln
XM_039811780.1 mRNA downstream 100 22000197 ~ 22002659 (+) True LOC120565766
XM_039811779.1 mRNA downstream 100 22000197 ~ 22002659 (+) False LOC120565766
XM_039810681.1 mRNA downstream 53260 22053357 ~ 22079019 (+) True zfr2
XM_039810684.1 mRNA downstream 53260 22053357 ~ 22079019 (+) False zfr2
XM_039810682.1 mRNA downstream 53260 22053357 ~ 22079019 (+) False zfr2
TU131036 other upstream 215919 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2466242 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3212283 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4125508 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4126072 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 283549 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 485414 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 492860 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 571962 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 572372 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile