RNA id: XM_039811789.1


Basic Information

Item Value
RNA id XM_039811789.1
length 4074
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120565772
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19520942 ~ 19529494 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCAGCATCCGTGCCTCGCGACATTTTCGGCAGCGGCATTGTTGCTCTTTGCTGCTCGCGGCCGTTGCGGATTTGCCCGCAGCAAATGTACCACCTTCTATCTAGCTACAGGAGCAATGCTAGCTTTTGTAATCGCCTAATGTTGTTTTTCTCGTAAATGTTAACCAGCTCGTAACGTTTTAAGTTCAGGCACGTTGCTAGCTAGCTTGATTAGCACTCGCGAAAAAATGAATTCCAACACGCACGTCATTCAGGTGACAAATGTCTCCCCGAGCACAACGTCCGAACAAATGAGGACTCTGTTTGGATTCCTCGGGAACATAGAGGAGCTCAAACTGTTTCCACCTGAGTGAGTATTGTGAACTATTCATTTGTAAAACGATGTCTTTACCGAGCTTACGTGGCTCACGCTGGGCTTCTCTTGAGGCCTGTTGCTAGTGTCGAGTAACGTTAGGCCTCTGTGCAcggcatgctaatgctaatgtttGCCCGCGCCTTTAGTTCAGCAGCATCACTCGCCTATTCCGCATGAGGGACACATGTACTGATAATTGCTCATGTTATGCAATTAGGTGAGGGTTTAAGCAAGGGTTTAAATGTCCTTTCTTCTACAGACTgagctgtagctagctaaccgTTTAAGGGGCTTTCACACCGCTGCGCAGTAACTCGCCGCCTCTAGTCATTTCAATGAGGGGAAGGCGGCAGAGGCGAAGCGGTTTTGACCACCGCGATAGATGTTGGTGCCCATGGGTAACGCAAGTATTCTGCTCTGCTCCCAGGGGTGCTTGAGTGGGTTCCATGCggtccccagcaaaaagggGAATTTATTTCATTAATAACTAACACAATAACAGGATATATGACTATTTTGGCCATTAgtttcatacactttctgtaataaaacctCCTAAAAGCAAAACTATCAGATGGGGGACCCTGGGACAAAGTCTTATCAAGTAGGGGtctgtggtctaatttgtgtcagtttaggggatTATTGATGTAAAAAACCAAATTGGGAACCACTTGTATAATAAGTCATAAGAAACCACTTTGATAAAATGTTAACGTTAGTTGTTTGAGTCACTTATCAAGCCAAAATGCTAGGACTTCAACTAAAGGTTATGTGTGTCATCTATTAATCTGACAATTACTTTTGATTAATCGTGTAGCAGCCACATGTCAggaaatggtttaaaaaatggCATTACAATTTCCCATAGTCAAGTTTGTCTAAAAGCTAAAGAAATATTCAGTTACAATAACACAAATAAAGCAATAAATCCTCATATTTGAGTAACTGAAAATAGCGTAAACACAGCATTTTAGTTTGATAAATGACCGTTAAAATCATTATCATTGTCAAAATTGATGTCTGTTAATTTGTCTAATTGTTTTAGCCCTGAAAAATACCTAGCATTAACCAATTTAAGTTTGTCTTTTTCTGCTTTACATCACTGTAAATTTAATAATTtgtgtattttctctttttctaaCACAGACTAAACAATTAAGTAATGGGAAATTAGTTTGTCAGATTAATCAACAGTGTAAATGaacattagttgcagccctagatgtAACCGCTGCAGCATTTTCTGCTTAATTGCTGATTAAAACAATGTGGAAAAACAAATTAACTTAGTGTTAATGTTGTCATGTCATTGACATCCTGTTAGCAATCCCTCGGGTTTCCCATATCTCCCTTGGGATGCTAATGAGCTACTGCAATAGGTACTCTACAGTGTTTTAACATTGACTATAGTAGGAAATAATTGTTGTCTGCTTTGTATTTTCCTGTATCCAATTACACCTGGCTTCTCAGCAGGTAGGACATGTCGAGGaccataacaacaacaaagattCAAAGCGTCAGTGATCGACAGTGTTCTTTGATTCTCAACAGATTGTCGATGAGGGTTGTGATAACACTAcatcacactgtaaaaagtCTCTCTTAAGATACCTTGTTGGTCTAAGCAAAGGATGTAGAGGTCAGAGAGTGGATGCGATTGTACAGCCCATAATCCATTATTAAGTTAGTGGTCCCTGGGGACACAACACTCATTGTCAGTTTGAAGAAGGCATGTTGGGTCTCCTTTTTTGTATTCCTTGCACAACATATCTGTATTTTCTTCCAGTGACTCTCCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAGTCTGAGTCGGTGGGAGTTTCCCAACACCTGACGAACACCGTCTTCGTGGACCGAGCCTTGATTGTGGTCCCTTTTGCAGAAGCGAAGCAGCCGGCACGAGTCGCTTGTTCATAAAACATCTAATGAAAGTTGAGAGCACATCCCACGGGACAACTGGCTGTGCTTGCTTACGTTTGGTTCATGACTTAAAAAACAAGTACAGGAGTCATTCCTGATGAATCTAAAGCTATGTCTCTGCTGGCCCCAGCCAATGCCGTGGCAGGAATGATGCCTGGGGGAGGCCTTCTTCCAACACCCAATCCTCTGGCAACAATGGGAGGGACGCCATTCGGAAGTCTTGGGGCTCCCAGCATGGAGCAAATGGCTGCCATGGGAATGCAGGGCCCTAACATGAACCCCCAGGCTCTTTCTGCAGACTTCCTGAAGCTCATGCAGTCCATGGACCCCAAACTGAATCCATTAGCGGCCGGACTGAACTTGAATGCAGGGCTGAAAAACGATGCCTCCAATAAGGAGATTGAAGAGGCCATGAAGAGAGTCCGAGAGGCCCAGTCTCTCATCTCTGCAGCCATTGAACCAGGAAATAAGAAAGATGACAAGCGCAAACATTCCCGCTCCCGTTCGCGGTCACGGCGCAGGCGCTCCAGATCTCGCTCAAGACACCGACGTACGAAGAGCAGGTCTCGGCGGAGGTCTCATTCAAGGAGTAGGAGGAGGTCCAAGAGTCCGCGGAGGAGGAGGACCCACTCCCGGGACAGAGGCCGGCGTAGTAGATCTAGGgacaggaggaaggaggagaagtCTAAGAAAAGGTCTAAGACGCCCCCCAAGAGCTACAGCAGTGCCAGGAGGTCTCGAAGCATTAGTCGGAGGCACAGGCGAAGCCGCAGTGCATCTCGGTCCCCCAGGAGGAGGCTGTCCAGGTCTCCGTCGCTGAGACGTcacaagaaagagaaaaagaaggacAAGGAGCGCGAGAAGGACCGGGATAGAGACAGGAGGGAGGACAGGGACCGGAGCCGAGATGAAAGGGAACGCTCCAGCAGTAAGAAGAAAAAGAGCAAAGACAAGGAGCGAGATCGGGAACGCAAATCCGATAGTGAGAAAGGAGACGTTAAGGTGACCCGGGATTACGATGAAGAGGAGCAAGGTTATGACAgtgaaaaggaaagagaggaggacgACGACGAGAGGAAGAGCGACTCCGACTCTGCCTCATCCCCCAAAGGCCAGGATGAGATGGAGAGATCAGAGGGTCAAATCCCCAAAAAGTCCAAACTGAATGGAGACGACCACCATCAGGAAGACATGGAGATGAGCGACTAAGAACATCCCGAACCAGACCTCGTTACCTTTTCCACTTTcctcttttatatttttaatatcgGCCACAACATGTCTGTGCCTGATCACTCAAAGTTAAAGATTTGTTGTCTTAACTGTAGAAGCATTTGGGGAAAAGCGGTTGTAGAAGGAAAGCAGTCCAATAATTTTTGTAAAGAGGACTAAAATATAACATGAGACATGGTTTTAAATTGTCATTGTACTTTTTTTAAtatcctgtttttttctttttgttgccttttgtgTTCAAACTCTGTCTTCCTGGCAGTAGAATACACAGCATTTCCCATTTAAAGTGctgttgtgtaaatattttgctaGTCGGGATTGAGTCCTCTCTCCTTTCAGATTGTTAGTCACTCACCTCCCAGCACCAACCATTTTGCTTTAACTGTAATGCACGAAGTCCTGTTTCAGCTGACCTTCCTATATACAACCCTTTGTAAGTGTACACTGTAGATTGAAATGTGTTGTTGCAATGAAATACATTAGGTTTTCCAAAGGAAACTAATAAAATTGGCTCAAACTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130157 lncRNA upstream 9737 19488090 ~ 19511208 (+) True LOC120565771
XR_005640283.1 lncRNA upstream 10135 19387232 ~ 19510810 (+) False LOC120565771
TU130147 lncRNA upstream 133742 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA upstream 186030 19334176 ~ 19334915 (+) True G96489
TU130108 lncRNA upstream 233272 19279469 ~ 19287673 (+) True G96455
TU130324 lncRNA downstream 147674 19677168 ~ 19683076 (+) True G96613
TU130321 lncRNA downstream 154656 19684150 ~ 19685085 (+) True G96610
TU130327 lncRNA downstream 221626 19751120 ~ 19751372 (+) True G96616
TU130372 lncRNA downstream 471334 20000828 ~ 20002125 (+) True G96648
XR_005640277.1 lncRNA downstream 517524 20047018 ~ 20047372 (+) True LOC120565691
XM_039811429.1 mRNA upstream 179889 19338866 ~ 19341056 (+) True fam43a
XM_039810842.1 mRNA upstream 468977 19044010 ~ 19051968 (+) False htr2b
XM_039811659.1 mRNA downstream 45361 19574855 ~ 19586645 (+) True cth
XM_039810777.1 mRNA downstream 626916 20156410 ~ 20256593 (+) False adgrl2a
XM_039810779.1 mRNA downstream 626916 20156410 ~ 20256593 (+) False adgrl2a
XM_039810792.1 mRNA downstream 626916 20156410 ~ 20256593 (+) False adgrl2a
XM_039810794.1 mRNA downstream 626916 20156410 ~ 20256593 (+) False adgrl2a
TU130059 other upstream 735309 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1648534 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1649098 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1652143 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 1654264 17866548 ~ 17866681 (+) True LOC120566215
TU130185 other downstream 1273 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2161403 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2754152 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2956017 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2963463 22492957 ~ 22501015 (+) False soat1

Expression Profile