RNA id: XM_039811826.1


Basic Information

Item Value
RNA id XM_039811826.1
length 2379
RNA type mRNA
GC content 0.50
exon number 11
gene id pgm1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12720091 ~ 12730969 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACGTGTGGCTGCTCTGCCACTGCAGTCGCCTCCTCATTGGGACAGATTGCGGATCACACGGGGCGACCTTAGGTGCTTTCTGGGGGTTAAAAAATGGTGAAAGTAACGACAGTGAAGACCAAGCCGTACACGGACCAGAAGCCCGGGACGAGCGGCCTGAGGAAGAGGGTGACGGTGTTTCAACAGAACCAGCACTATGCGGAAAACTTCATCCAGAGCATCATCTCTGTCATCGAGCCTGCCGAGCGCCAGGCTGCCACCGTGGTGGTGGGAGGAGATGGGAGGTTTTTCATGAAAGACGCGATTCAGTTGATCGTTCAGATTGCTGCTGGCAACGGGATTGGCCATTTGGTGATTGGTCAGAATGGCATCATGTCCACGCCAGCAGTCTCCTGTGTGATCCGGAAGATAAAGGCAGTGGGAGGCATTATCCTCACAGCCAGCCACAACCCTGGAGGCCCCACTGGAGACTTTGGCATTAAGTACAACATCTCCAGTGGAGGACCTGCTCCAGAGGGCATCACAAACAAAATATTTGAGATCAGCAAAACCCTGCAGGAGTATCACATCTGCCCAGAGCTGAAAGTGGATCTGTCCAAGATCGGCAAACAGACCTTTGAAGTGGACACTTTCAAACCTTTCACAGTGGAGATTGTGGACTCTGTGGAGGCCTATGCTGAGATGCTAAGGGGCATCTTTGACTTTGCTGCACTGAAGAATCTTCTCTCTGGAGCCAGTCACATTAACGTCCGCCTGGATGCTATGCACGGAGTGGTTGGTCCTTATGTGAAGAAGATAGTCTGTGAAGAGCTGGGTTCTCCTGCCAACTCAGCAGTCAACTGTGTCCCCAAGGAGGACTTCGGGGGCCACCACCCTGACCCCAACTTGACCTATGCTGCCGACCTGGTCAACACCATGAAAGGAGGAGAATATGATTTGGGCGCAGCCTTTGATGGTGATGGTGACCGTAACATGGTGCTGGGTAAAAATGGCTTTTTCGTGAACCCCTCCGACTCAGTGGCTGTCATTGCTGCCAACATTACCAGCATCCCTTACTTCCAGAAGACTGGTGTCAAAGGACTGGCCCGCAGTATGCCCACAAGTGGAGCCCTTGACAATGTGGCGAAAGCTCTGCAGATGCAGCTGTACGAGACTCCCACTGGCTGGAAGTTCTTTGGAAATCTGATGGATGCTGGAAAACTTTCACTGTGTGGAGAGGAGAGCTTCGGCACAGGCTCAGATCATATTCGTGAGAAGGACGGCTTGTGGGCGGTGCTTGCATGGTTGTCAATCTTAGCTGCCAGGAAACAGAGCGTGGAAGAGATCATGAAGGATCACTGGCAGAAGTTTGGCAGGAACTTCTTCACCAGGTACGACTATGAGGAGGTCGACTCAGACGCGGCCAACAAGATGATCAAGGATCTGGAGACGGCAATGTTCGACCCGTCCTTCGTAGGGAAGAAGTTATCATCAGGTGATAAGACTTATGAGGTCGCTGTCTCTGACAACTTTGCCTACACGGACCCTGTGGACGGAAGTGTGTCCAAAAACCAGggccTCAGGATCATCTTCTCTGATGGTTCTAGGATAATTTACCGTCTCAGCGGTACAGGCAGCGCGGGAGCAACCATCAGGCTCTACATAGACAGCTATGAGAAGGACCCCCAGAAGATTTACCAGGACCCACAGgtgatgCTGGCTCCCCTGGTGGACATCGCCTTGAAGGTCTCTCAGCTCCAAGAGAAGACTGGACGCACTGGCCCCACTGTGATCACATGAGTCCTCTGCCACACTGCCTCCACTCACCCTCAGCAACAGGATACCTCTGCTCTCTCCGGGGTGAAGCTGCCCTTGAATGCTGTCTTGGCTTCCTATCCTGGCCCTCTTAGAAAAACCCAGCtggacaaaaaagtgaaactcaACATGCAGGATGAATACAAGAAAATACATGAGGAGCTCTTGATTTATCTTACACTGAAAGTGATCCACTGCCATAGTCTTGTGTTGGACAAGGATGAGTTTTAATATATGCTGTTTTCTTAAACTAAGGGAGAAAAATCAGCCTTAGGTTGTCAGATCATTTATCTTGACACTACTCGAGAGAAAAACTTGAACGGAGAGTTCCTCATGTAATTTCTGGAACCATGCTTAATCATGTTATTGTCCAGATCTGTTGCTGAACCATATCATTAAGTGGAGAAACTGACCGTAAATCAGCAATTTGGGGCAACCTCACCCCATGTTTCCCTGACTACCTGGTGCCTTCCCCTCCCTGTGTTCTCCAAAATCACCAAAATAGTCCCTTAACCATGAGCCACAGCTACAGCATTGAGAACTAACATATCCACCGTAAATAAAATAACCTCACATAAAAGCA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127958 lncRNA upstream 277011 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 278230 12353673 ~ 12441861 (+) False lrp8
TU127967 lncRNA upstream 362072 12311823 ~ 12358019 (+) False lrp8
TU127963 lncRNA upstream 523475 12161638 ~ 12196616 (+) False lrp8
TU127883 lncRNA upstream 800054 11916631 ~ 11920037 (+) True G94813
TU128119 lncRNA downstream 134046 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 134943 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 264266 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 367818 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 376720 13107689 ~ 13112320 (+) True G95027
XM_039811307.1 mRNA upstream 2406 12703144 ~ 12717685 (+) True efcab7
XM_039811305.1 mRNA upstream 29833 12670221 ~ 12690258 (+) True alg6
XM_039811306.1 mRNA upstream 29833 12670381 ~ 12690258 (+) False alg6
XM_039810268.1 mRNA upstream 56198 12661919 ~ 12663893 (+) True foxd3
XM_039812170.1 mRNA upstream 197657 12512616 ~ 12522434 (+) True atg4c
XM_039812265.1 mRNA downstream 11836 12742805 ~ 12865842 (+) True ror1
XM_039812266.1 mRNA downstream 11836 12742805 ~ 12865842 (+) False ror1
XM_039812267.1 mRNA downstream 11836 12742805 ~ 12857625 (+) False ror1
XM_039811947.1 mRNA downstream 165318 12896287 ~ 12994764 (+) True cachd1
XM_039811948.1 mRNA downstream 206321 12937290 ~ 12994764 (+) False cachd1
TU127781 other upstream 1275558 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1471444 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1771845 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1778847 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2560284 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 274607 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 442056 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 648429 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1888389 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2079399 14810368 ~ 14916606 (+) False dennd1b

Expression Profile