RNA id: XM_039811849.1


Basic Information

Item Value
RNA id XM_039811849.1
length 4087
RNA type mRNA
GC content 0.51
exon number 30
gene id atp8b3
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26143887 ~ 26189922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAGGACTTTGCCGTAGCTGGTGACCGGTTTTCGTGTTTGAGCTGTGTTTTTTGGACTAACTGCTAACTTAAGGTGAACAGGGAGGACAGTCGGTGATACCGGAGCCTTCACCTGGGAGCGAGAGGAAGGCGCGGCCTGGAGCATACAGTACAGAGGAAAGAGGGGGAAGGATGAAACAGGTTAGATCCAGAGGGTTGGATCTGAGCAGCCTCGGTTCTCTCTACAGTAGGATTGCTCATCCAGATTCCAGCAGAGATTTAGCCAGAAGACATAACCCAGGTCTGCAAACGTCTGAGTCTCCTCTGCATTATGGCCAAGGAAAGTGTCGAATCTGGCCTCACATGGGAGGTGAGGGCAAACAGCcgccactaccacaaacaaaaacagaagaaatCCTTTCTGTGTTTCCGCTGGGGGCAGTACGCAGACAATGCGGTCCACAGCCACAAGTACTCCGCCCTGACTTTCCTGCCGCTGACGCTGTTTGAACAGTTCCAGCGAGTGGCGAATCTCTACTTTCTCCTTATGATGGTGTTGCAGTGTGTCCCGGTCATCTCAGCCATACCTTGGTACATCTCCTTCATCCCGCTGCTCATCATACTCTCTGTGAGAGGGATAAAAGACCTTGCCAACGACATGGCCAGGAGACAGAGTGACTCCAAGATTAACTCCCAACCCTGTGACGTACTCGTCTCCCAGAGTTTCAGCAGAGCACAGTGGAAGGATGTGCGTGTGGGAGATGTGCTGCGAATCCACAAAGACCAAGTCATCCCTGCTGACCTTCTCCTCCTGTGTAGCTCCGAACCTCACAGTCTGTGTTATGTGGAGACAGCAGATATCGACGGAGAGACTAACCTCAAGTTCAGGCAGGCGCCCAGTGCTGCACACAATGAGCTGACCTGTCAGCCCTCAGAGGAGATGCTTGCTGCCTTTGatgGTGTCGTGCTCTGTGAGGAGCCCAACAATCGCCTTTACACCTTCAGAGGCCAGCTGCACTGGAGAGGAGAGTGTCTTCTGCTAGACAACGAGCACATCCTCCTGAGGGGAACAGTCCTACGCAACACAGAGTTTGCCTACGGCTTGGCCATATACACTGGCGCAGACACCAAGATCCTGAGGAACTGCGGGAAACTGAGAGTGAAGAGGACTCAAACGGAAAAAGTTTTCAACAAAGTGGTGATCGGGATCGTCCTGTCCGTGTTGCTGGCTGCTCTGCTCCATGCCATCGGCGCTGGCCTGTTTTCGAGTTGGGTCATGAGCCATACAGGGGTTCCATATGCTCTGGTGGTTAACGGCAATCCGGTCTACACTGGGTTTCTTGTCTTCTGGAGCTACATAATCCTGCTCAGCCCGGCCATGCCCATTGCTCTCTACATCTCGTTTGAGGTGATCCACACGGTCCACAGCCTGTTTATTGGCTGGGATATGGAGATGTATTGGCAGCAGGCAGAAAGACCGGCCCATGCCAGAAATACCTCACTGAATGAGGAGCTGGGCCAAGTGGGATACCTGCTGAGTGACAAAACTGGGACACTAACCCAGAACCGTCTGCTCTTCAGACAGTGCTGCATAGCTGGGGAGAtctatgGTGATCCGTCAGTCAGGGCAGAGGAGACCGAGCCCATGGACTTAAGCTGGAATCCGTTCTCCCGCGGGGGTCTGTTCATGTCGGCTCCGAGCCTGGTGGAGAAGCTCAGAGGACAGCAGTGTCCATTCAGCAGACAGTTCCTCAGAGCGCTGTCTTTATGTCACACCGTCATGGCAGAGTGGAAAGaagAGGCTCCAGTGTACCAAGCTGCGTCCCCAGATGAGGAAGCTCTTGTTGGTGCGGCTAGGGAGCTGGGCTGGGTCTTTCTCTCTAGGACAAGAGACTTTATTATTGTCTCCGAGCTGGGTGTCATTCGCCAATATCAGCTGCTTGCACTGCTGGACTTTACCAGCAAGAGAAGACGCATGTCTGTACTGGtgcGGGAGCCAGAGGGTGGGTTAAAGCTGTACTGTAAAGGGGCAGACATAGTGATCCTGGACAGACTGCAGAAGGACTGTCCATATCAGGAAAGGACTGAAAGAGCCCTGGAGTTATTTGCCCAGGCCTGTCTGAGGACTTTGTGTGTTGCGGTTCGATCTGTCCCTGAGGCATCATGGGAGCAGTGGAGTAAAACATTGGCCCAGTCTGCTGCCATGGCGACCTGTGACCGTGACGCACTACTGGAAAAGCTATATGATCAGATGGAGAGAGAGCTGCAGtttttagGGGTGACAGCGATAGAGGACCGGCTTCAAGAGGGCGTTCCTGAGACTATTGCTCTGCTTCAACAGGCCGGGCTTAAAGTATGGGTCCTTACTGGGGACAAAAAAGAGACTGCAGTGAATATTGGATATTCTTGCAAGCTACTGGATCCTGATACCAGATTACTGGAATGGCAGGAGCTAAGACAGATACTCCAGTCCCCAGACCCAGCGGTCAGTTTCTTCAAGGCCAGACAGACAGCGCTGTGGGCTGTAGACAAGCAGGCGGCTGGAGTAAAGACTGCTGTGGTCCTAACTGGACCTGAGCTGGCAGAGTTTGACCAGAGACCAGAATGGGGGGCGACGTTCATGAGCCTGGCGGAACAGTGTCAGTCTGTGCTATGCTGTCGTGTAACGCCTGGACAGAAGGCTGACATTGTCACGTTGGTCAGGAAACACACCAGCTCAGTCACCATGTCCATCGGGGACGGTGCCAATGATGTAAACATGATCAAGACGGCTCATGTTGGTGTGGGACTAGCAGGAGTGGAGGGTGGTCAGGCAGTGCAGACGGCAGACTTTGCATTGTCCCAGTTCAGATTCCTGCAGAGGCTGCTGCTGGTCCATGGGCGCTGGTCCTACAGGCGCATTTCCCTCTTCTTGCGGTACTTCCTGTTTAAGACCTGCAGCTTTGCTCTTGTTCACATATGGTTTGGGTTATTCAATGGCTTCAGTGCTCAGTCTCTGTATGAGACATGGTTCATCGCTCTCTACACTGTCCTCTACACAGCGGCCCCGATTATGTGTGTGGCCTTCTTTGAACAGgaCGTGAATGCAGACAGCAGCCTGAAATGGCCAGAGCTGTACAAGTCTGGACCGAGACAGGAGCTCTCCAGCCCTCTCATGCTGTTCTTATCACTCCTGTACGCTGTCTACTCATCGCTTGTTCTCTTCTTCATCCCGTTTGGAGTCTATTACAACACAGACTACGACCTCCAGACCATGGCAGTCACTGTCGCCATGGCAGCCACCTTCACTGCCACCGTTGAGATCACGCTACTGACCAGATACTGGACGAAGTTCAATGTAGCATTTGTGTGCATCTCTGTGGTGTTTTTCTTCATCTGTAGCAGGATCACACAAAGCACCCGCCTGTTTGAGAGATCACCCAGCGACTATTTCTTTATCGGTGCGTCTGAAAGGGCCTTCATCGATCCACTTGTGTGGCTCGCAGCTCTGTTCACCACCTGGACGGCTGTTCTGCCCTCAGTGACCGCCCTTGCTATCAATGTTATCCTCACCATGCATGACAAACACAAGGTCCACAGTGCGTCTCTTCAGCCAGTGGAGCTGAGGTCAAAGTTGAGAAGGGGAACGTCCCTTCGCCGCTCCTCTTACGCCCTCTCTCAGGGAGCTGGGCCTGGACGCCTCATCACTTCAGGGACCTGCATCCGCAGCACAGTGCCGACGGTGGATGAGAAGGTGACTGAAAGTGAAAACTCCACTGACTCACAAGTCCAAATTCACATGAAGGACAATAGCCATGTACCAAATGGCACAtgaataatgataatgatgaaTTTAAGGTTTTAATATGAGAAAATATTTGATTATATAGATTGTTACTGCAACATAGAATTGAAAAGAAGATTTGCGTGTTTGCacctaaaacatgtttttgtgggCAGTTCTTAGTAGCTAGAGTCTGCACTCATCTTTTGTATTGCTACCATTTTCACACAATAAAGTACAGCATATGATATACAAAATACAATATGTACTATAAATCTTGTTTATTGTCTTTACATGAACTACctaggtccgtgtactttttcgttcattcgattttcatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132719 lncRNA upstream 7257 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA upstream 7257 26135277 ~ 26136630 (+) False G98363
TU132705 lncRNA upstream 104040 26034761 ~ 26039847 (+) False oaz1a
TU132643 lncRNA upstream 218837 25884516 ~ 25925050 (+) True G98312
XR_005640280.1 lncRNA upstream 306140 25786331 ~ 25837747 (+) True LOC120565749
TU132754 lncRNA downstream 1946 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 102178 26292100 ~ 26292440 (+) False zbtb7a
TU132802 lncRNA downstream 104617 26294539 ~ 26294993 (+) False zbtb7a
TU132812 lncRNA downstream 149649 26339571 ~ 26342204 (+) False LOC120565098
TU132817 lncRNA downstream 149649 26339571 ~ 26342293 (+) False LOC120565098
XM_039812390.1 mRNA upstream 8724 26097785 ~ 26135163 (+) True lingo3a
XM_039812389.1 mRNA upstream 8724 26098381 ~ 26135163 (+) False lingo3a
XM_039810190.1 mRNA upstream 90266 26050911 ~ 26053621 (+) True org
XM_039810881.1 mRNA upstream 104021 26034751 ~ 26039866 (+) True oaz1a
XM_039810879.1 mRNA upstream 112824 26027275 ~ 26031063 (+) True amh
XM_039811431.1 mRNA downstream 54374 26244296 ~ 26257447 (+) True pias4a
XM_039811876.1 mRNA downstream 68382 26258304 ~ 26268496 (+) True map2k2a
XM_039810453.1 mRNA downstream 93130 26283052 ~ 26295382 (+) True zbtb7a
XM_039810471.1 mRNA downstream 116700 26306622 ~ 26339210 (+) False tcf3b
XM_039810467.1 mRNA downstream 116701 26306623 ~ 26339210 (+) True tcf3b
XR_005640198.1 other upstream 124516 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 411710 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 596798 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1270013 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 602765 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1838050 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1947347 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2582466 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3473711 29663633 ~ 29665090 (+) True G99297

Expression Profile