RNA id: XM_039811878.1


Basic Information

Item Value
RNA id XM_039811878.1
length 1843
RNA type mRNA
GC content 0.49
exon number 11
gene id zgc:103559
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 41527401 ~ 41533655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCCCTCAGATACCACACATGGTTGGACCTGAAATTCAGCATGTCACACAGACAGGAAAAGTCAACAAATGCTTATCCTTTGGGCCATTTAGCAGGGGGTGGTGCCTCAGCACTAGGCCGCTGACCTTTCTGAAGTGTAGAAGCAGAGTTAGAGTTTTTTGTACTCATTCATTCTCAATAAAGACAGACATGGAGCTTGGATCAATTGTTAGTGCTGTGAGGAGTAAGAGGGTACTGCTCGGTGACGAAGTCCGTCCTGCTGTCATCGTTATAAAGGATGGGAAGATCCATCAAATACTCTCAGACAGCGACTTTTCTGGAGATGTTGCTGGTGAGGTGTTGGATGTGGGTGACAGGCTGGTGATGCCAGGCATTGTAGATTGCCACGTTCATGTGAATGAACCAGGCCGCACCTCCTGGGAGGGTTTCTGGACTGCCACCAGGgctgctgcagctggagggGTGACAACCATTGTGGACATGCCGCTAAACAGCATCCCTCCAACGACCACACTAGGAAATTTTCACGAGAAGCTGCAGGAGGCAACAGGGAAGTGTTTTGTGGACACAGCCTTCTGGGGAGGTGTGATTCCTGGCAATCAGTTAGAACTTCGGCCCATGATCCAGGCTGGAGTGGCTGGCTTCAAGTGTTTCCTCATCCATAGTGGGGTAGAGGAGTTCCCTCATGTGAATGACTGGGATCTACACAGAACCATGAAGCAGCTGCAAGGCACAGGAAGTGTCCTGCTGTTTCATGCAGAGAGGGATGTTCAGCAGACAACAGAGGAGAATGGTGACCCTTGTCAGTACTCCACCTTTCTGCAGTCCCGACCAGATGACATGGAGATAGAGGCAATACGCACCGTCACAGAACTCTGCCTCCAGTACCAGGTGCGGTGTCATATAGTTCACTTGTCCTCTGCAAAGCCATTGAAACTAATACAGGAAGCACGGCAGGCTGGAGCACCCCTGACAGTGGAGACTACTCACCACTACCTCAGCCTGTGTGCAGAGAACATACCCGCAGGGGCTACACAATTCAAGTGCTGCCCACCCATCAGAGGATCTGTTAACCAGGAGCAGTTATGGTCCGCACTGAAAGCTGGGCAGATTGACATGGTGGTGTCTGACCATTCCCCTTGCACCCCTGATCTGAAGAAACTGGATAATGGAGACTTCACTGAGGCTTGGGGAGGAATTTCTTCTCTACAATTTGGTTTGCCTCTGTTCTGGAGTTCAGCCAGTAAGAGAGGCTTTAAGCTGTCTGATGTGGTGAGACTCCTCAGCCAGAAAACAGCCCAGCTAAGTAGTCTTGACAACCAGAAGGGCAGCCTTGCCCCCGGCTATGATGCTGACTTGGTCATATGGGACCCAGAGAGAGAATTTGAAATAAAAGAAGCAAGCATTTATCATAAAAACAAGCTAACTCCTTACCTCGGTGTCACACTGCAAGGAGTGGTGTGTGTGACCATTGTCAGGGGCCTGCTGGTGTACAGAGAAGGCTCCTTCTGCCCCGAGCCTCTGGGGAAGCATCTCCTCATCCCAATCCAGCCCAACTGTGGAGCACAATAACAACAAGCTGGAAATGACCTCAACATATCTAGAGTTATTGTATTGTCTGAATCTGTGAAAGTGCCCCATGTCGTTTTCTTCATCTCTCTCACCTAATATATGCTTTACATTAGATTTTATCTGAACATTTTGAAATCACAATTTGCGAATTGCAGAATTCCCTACCTCCTCTATAGatggttaaaggggtgatagaatgattatatagggtatttcacaaagttccttatggtctcctaatggggtatgtaacattggttgggctgaaaat

Function

GO:

id name namespace
GO:0000256 allantoin catabolic process biological_process
GO:0050897 cobalt ion binding molecular_function
GO:0004038 allantoinase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01466 allB; allantoinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137567 lncRNA upstream 15031 41511984 ~ 41512370 (+) True G102189
TU137438 lncRNA upstream 258745 41209660 ~ 41268656 (+) True G102074
TU137445 lncRNA upstream 292999 41231667 ~ 41234402 (+) True G102081
TU137379 lncRNA upstream 370361 41156552 ~ 41157040 (+) True G102022
TU137378 lncRNA upstream 370934 41154922 ~ 41156467 (+) True G102021
XM_039810211.1 mRNA upstream 299745 41226610 ~ 41227656 (+) True im:7152348
XM_039811640.1 mRNA upstream 421653 41086373 ~ 41105748 (+) True bcl6aa
XM_039811641.1 mRNA upstream 421653 41098958 ~ 41105748 (+) False bcl6aa
XM_039811886.1 mRNA upstream 780024 40737734 ~ 40747377 (+) True zbtb11
XM_039812404.1 mRNA upstream 804566 40715933 ~ 40722835 (+) True dpt
TU137538 other upstream 74095 41452674 ~ 41453306 (+) True G102165
unassigned_transcript_391 other upstream 301696 41225634 ~ 41225705 (+) True trnap-ugg_3
unassigned_transcript_390 other upstream 302239 41225091 ~ 41225162 (+) True trnap-cgg_3
XR_005640166.1 other upstream 974444 40515093 ~ 40552957 (+) False atp10a
TU136718 other upstream 1961446 39561122 ~ 39565955 (+) False reps2

Expression Profile