RNA id: XM_039811880.1


Basic Information

Item Value
RNA id XM_039811880.1
length 2366
RNA type mRNA
GC content 0.42
exon number 6
gene id sec22bb
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25653862 ~ 25663704 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACACACAAAGCTCTTGCGTTTCCGGCCAGCTCAGCGCCTCAGCCCTGTGGTGTTGTCAGTTTACAGCCTCTGCCAAACCCAGTCTCAGTTTACCTGGAACATTTTTAGTGGGCAGCGGAACCGGACATCGCGGAGAGATGGTGCTGCTGACGATGATCGCTCGGCTGGCTGACGGACTGCCGTTAGCCGCTTCAATGCAGGAGGACGAGCAGGGAAGTGAAAAGTTGGGTCGGGACCTTCAGCAGTATCAGAGTCAAGCTAAGCAGCTCTTCAGGAAACTCAACGATCAGAGTCCCACACGCTGCACTTTAGAGGCTGGCTCCATGTCATTTCACTATGTTATAGAGAAAGGAGTGTGCTACCTTGTGCTGTGTGAAGCCAGCTTTGCTAAGAAGCTGGCCTTTGCTTACCTTGAAGACCTGCAGGCAGAGTTTCATGAGCAGCATGGAAAGAAGGTCCCCACAGTTTCCCGGCCCTACTCCTTCATTGAATTTGACACCTACATCCAAAAAACCAAGAAGTCGTACATTGACAGCCGAGCACGAAGGAATCTGGGCAGCATCAACACAGAGCTCCAGGACGTACAGAGGATCATGGTGGCTAACATAGAGGAGGTGCTGCAGAGAGGAGAGGCTCTCTCGGCGCTGGACTCCAAGGCCAGCAACTTGTCCAGCCTGTCGAAGAAGTACAGGAGCGACGCCAAGTATCTGAATACCCGCTCCACCTATGCCAAGCTGGCAGCCGGTGGTGTCTTTTTCATCATGCTCATTGTCTATGTGCGCTTCTGGTggctctgagagagagagaaaagagaagaagtggAAAATGAGCTGCACAGAGTCTGCAGACACTTAAGAAAAGCTGTCACCTTTGACTAAAAACAGGATCCCTGCTCTTAAAGACTTTGCAGACATACCACCACCCATTTTGTTCTCACTTGTCCATGGATGTGTGATCTGAATATAAATGATGTCATAATGCATAGTTTTATTATTAACAATCATACAGTAATGCGCTAGTGGAAGGAaatgagtgaatgtgtgcgtgcgtgggttGATTGCGCAGTTTATTTGCAGGTGATTAGTTGTGGAGGGAAAATGAAGAGAAACAGAAATGTCCTGTTTTGTGAGTTTCCAAagctgtactgtactgtactgtaacagGACTGATTTAATACGTTTAGTGTTTACTGTCTAATAATAcagaaaagagcaaaaaaaaaactatttatccTAAGCACTTCATATGGGTAACTGCGTTCTTtaacattataatagtagtagtagatgGCTTGACGGGCCTTGACTACCCAGTTACAAAAAATTGGAAAACATGGCATTCATTCTTTTAGTTCTTTTAGTTGGCTCAGCaacaaaataggaaaagtaATTAAGTTTTCCTCTTTATGGGATATCCAACATTTATTAGGGGGTCAGACAAGGGGGagggtgatgtttttttttttttttactttttttgggcGAGCAGGGGTGGATCATTTAATTTTACTTACCCCAAATTGATATTTCAGCCTTCCCTAGCGAGATGATTTATAATTTTCGTTTTTTAAAGTATGCAATATTCTCAAGACAGTGGTTTAGTATGCACAGTGGGTCATAAAGGTGCCCTTAATAATCTTGTCACAgctttatttcatattttcccATCACAGTCAACTAGCTTGTAGAAatatgggtaacactttacttgaaggtatctacataagagtgacatgacactgtcatgacacatgaaccctaaccctaacttgtcatgacaaaatgaTGACGAATGATACTGTCTGACAGAAGCGTTGTGTCAttaacgtttatgacttgttcatGACACATtgatgacagtgtcatgtcactcttatgtagataccttcaagtataGCATAACCGAAATATGTCAATAATgataaacaaaaaatatggaTATTCATGTTTACGGATAATACTGATTAAATGAGCTCTACCAGCAGTAGTTCCTCCCCTTCACTTTAGcattcatcaaaacaaaaagttaaATGTGTCACATCAAGCTGGCCTATGTCGTAATTCAAGTGCAGCCTATTAGTATCTCTTTATTCTAAAATAGAGAGTGGCTGGAATATTCATACTCCCTTTATTGCACCGTGGCTGTGTGGACCCGCACCTTTCTGTTAGCaggcatataaaaaaaaaaattaaaaaaagtatgtCTTGTTGAAgatgcctttttattttgtgtaaagTTTCCACATCTAGACTCAATTTAAAAGTGGACTAAGGCTGAGAGACACAGGTACTCACGGCTGAAAAGGACaccttctctttttctgttctgtCTGCTATCTATGAATAaaatcatttgcacaaagca

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132489 lncRNA upstream 45471 25558113 ~ 25608391 (+) False G98196
TU132490 lncRNA upstream 80987 25558113 ~ 25572875 (+) False G98196
TU132488 lncRNA upstream 93827 25558113 ~ 25560035 (+) True G98196
XR_005640183.1 lncRNA upstream 132575 25520872 ~ 25521287 (+) True LOC120565050
TU132480 lncRNA upstream 138120 25515050 ~ 25515742 (+) True G98188
TU132603 lncRNA downstream 75427 25739131 ~ 25740549 (+) True G98280
TU132636 lncRNA downstream 122621 25786325 ~ 25837380 (+) False LOC120565749
XR_005640280.1 lncRNA downstream 122627 25786331 ~ 25837747 (+) True LOC120565749
TU132643 lncRNA downstream 220812 25884516 ~ 25925050 (+) True G98312
TU132705 lncRNA downstream 371057 26034761 ~ 26039847 (+) False oaz1a
XM_039811164.1 mRNA upstream 40449 25601881 ~ 25613413 (+) True npl
XM_039811561.1 mRNA upstream 177627 25468399 ~ 25476235 (+) True abhd17ab
XM_039811667.1 mRNA upstream 186859 25458582 ~ 25467003 (+) True zgc:77486
XM_039811666.1 mRNA upstream 190419 25457253 ~ 25463443 (+) False zgc:77486
XM_039810768.1 mRNA upstream 196703 25444403 ~ 25457159 (+) False plin3
XM_039810898.1 mRNA downstream 14832 25678536 ~ 25729476 (+) True notch2
XM_039811748.1 mRNA downstream 66521 25730225 ~ 25738789 (+) True slc35a3a
XM_039812330.1 mRNA downstream 85171 25748875 ~ 25755656 (+) True rex1bd
XM_039812326.1 mRNA downstream 106289 25769993 ~ 25784438 (+) True tmem59l
XM_039811584.1 mRNA downstream 177098 25840802 ~ 25937832 (+) True ssbp4
TU132486 other upstream 106773 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 779988 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 779988 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 869981 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 2176044 23474782 ~ 23477818 (+) True G97596
TU132604 other downstream 66554 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 327802 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1128983 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2364268 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2473565 28137269 ~ 28146325 (+) False LOC120564865

Expression Profile